Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 540 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3 from Pseudomonas syringae pv. syringae B728a

 Score =  122 bits (305), Expect = 4e-32
 Identities = 86/281 (30%), Positives = 148/281 (52%), Gaps = 22/281 (7%)

Query: 159 MVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEA 218
           M N L++ I+ ++    +A   LV A +   Q++ A+ Q++ A  +QS     ++  +E 
Sbjct: 254 MQNRLREMIQQIS----QAANQLVVAVQ---QISGASEQLSGAIQEQSTSASAMAATIEE 306

Query: 219 TSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNE 278
            +     V++ AD+    A    + S+ G + +EN + +M  I   ++     +  LG  
Sbjct: 307 LTVSIHHVSENADEAHELASRSGQQSKDGAQVIENTLSSMNGIARTVQLSSTQVAGLGQH 366

Query: 279 SKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDI 338
           S+ I+ +  +I+ +A+QT LLALNA+IEAARAG+ G+GFAVVA E++ LA+   KS ++I
Sbjct: 367 SEHISSIVSVIQGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQNTGKSTKEI 426

Query: 339 NRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNA 398
              I  +   V  T++   SG  EV++GV        A ++I++S    S K+  +    
Sbjct: 427 AGMIEKIQAGVRETVESMRSGVQEVNEGVEMAGTAGQAIIEIRDS----SGKVLQV---- 478

Query: 399 ERAVNNVETALKD----SQDIASISEEFAATAEELTASAEE 435
              V+ +  AL++    SQD+A   E  A  AE+   S +E
Sbjct: 479 ---VDQISFALREQTAASQDVARNVERSAQMAEQNNISVQE 516



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 48/256 (18%), Positives = 115/256 (44%), Gaps = 30/256 (11%)

Query: 214 DQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQ 273
           DQL+A   ITS    A  D++ A +     +E+   + +  ++  Q +T+  ++L   I 
Sbjct: 143 DQLDA--RITSGADKAKMDSMRALL-----AEISGAEQKLLVQRSQDMTDA-KHLAILIL 194

Query: 274 ELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKK 333
             G  +  +  + +++  V  ++    L  +I+AA A   GK   V+ +   S  +E+ K
Sbjct: 195 MCGGLAAAV--LAMILAAVLGRSTTARLQLAIDAATAIANGKLDTVIDT---SSHDELPK 249

Query: 334 SVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINS 393
           + + +   +  + +++              ++ V+A+ +++GA  ++  +++  S   ++
Sbjct: 250 AFDRMQNRLREMIQQISQA----------ANQLVVAVQQISGASEQLSGAIQEQSTSASA 299

Query: 394 IKVNAER---AVNNVETALKDSQDIAS----ISEEFAATAEELTASAEEQSRIMNEIDDA 446
           +    E    ++++V     ++ ++AS     S++ A   E   +S    +R +      
Sbjct: 300 MAATIEELTVSIHHVSENADEAHELASRSGQQSKDGAQVIENTLSSMNGIARTVQLSSTQ 359

Query: 447 IEEITKSSEQISKDVS 462
           +  + + SE IS  VS
Sbjct: 360 VAGLGQHSEHISSIVS 375