Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  140 bits (353), Expect = 1e-37
 Identities = 101/345 (29%), Positives = 164/345 (47%), Gaps = 20/345 (5%)

Query: 111 KDVSNTFSELHTIFKSLEQGDFTIRANTDRK--YNALQVTTNNAIVNVSTMVNDLKKQIE 168
           + ++    E   + + +  GD +   N DRK     LQ T     V++  +V  ++  + 
Sbjct: 309 RQITTPLQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVT 368

Query: 169 YLN--AELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAV 226
            +   AE L A  +   A   S++V     QVATA  + +A +Q+V+   E  SE     
Sbjct: 369 QIASAAEELSAVTEQTSAGVNSQKVE--TDQVATAMHEMTATVQEVARNAEEASE----- 421

Query: 227 TDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVT 286
                    AA+  +  +  G + V  AI  ++ + + + N  +A+  L  ES KI  V 
Sbjct: 422 ---------AAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESDKIGSVL 472

Query: 287 VLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVN 346
            +IK VAEQT LLALNA+IEAARAG+AG+GFAVVA E++SLA+  +KS E+I   I  + 
Sbjct: 473 DVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIARLQ 532

Query: 347 RKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVE 406
              +    +  S ++     V       G+   I ++V +       I   AE      E
Sbjct: 533 SGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSATAE 592

Query: 407 TALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEIT 451
              +   ++  +SE+ +A +EE  AS+ E +R+ N +   +   T
Sbjct: 593 EINRSIINVRDVSEQTSAASEETAASSVELARLGNHLQVLVSRFT 637



 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 64/365 (17%), Positives = 137/365 (37%), Gaps = 63/365 (17%)

Query: 160 VNDLKKQ--IEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLE 217
           VN+L  Q  I  ++ E+L   E   +   T +++ DAA Q A         LQ +  Q++
Sbjct: 56  VNELTLQLRINRMSYEVLYNAETAAKVRSTLDEL-DAALQTARNLLRSPENLQLLDVQIQ 114

Query: 218 ATSEITSAVTD---AADDTVTAAIEIEENSEMGVKKVENAIETMQSITNV-----IENLG 269
           AT +   +  D   A D    +  ++ EN++  V +       +    N+     I  + 
Sbjct: 115 ATRDYRQSFEDMSKAIDTREASRSQMGENADKAVDQANRIEAELLKEDNILAFNGIVGVS 174

Query: 270 KAIQELG----------------NESKKINEVTVLIKDVAEQ-------------TGLLA 300
           K IQ+                  + +K I++    I  +A                GL  
Sbjct: 175 KLIQQARFQVRGYTYSGRPDFEKDANKAIDDAVTGINTLAGDISSTYSPMLQQAIAGLNG 234

Query: 301 LNASIEAARAGDAGK----------GFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVE 350
             A++   R   A            G +++A+    +  + K    D  +++  +     
Sbjct: 235 YRAAVGKYRDAQAASKAALDKMTTLGVSMLATSNDLITRQNKSRDADSAKSVQMIIAATA 294

Query: 351 ATIDLGISGKDEVDKGVIA--------IDEVNGAFLKIKESVETTSEKINSIKVNAERAV 402
             + LGI     + + +          ++ V    L    +V+   E +  ++   +R  
Sbjct: 295 LAMVLGILAAWVITRQITTPLQETLEVVERVASGDLSRNLNVDRKDE-LGKLQATIQRMT 353

Query: 403 NNVETALKDSQD----IASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQIS 458
            ++   +   +D    IAS +EE +A  E+ +A    Q    +++  A+ E+T + ++++
Sbjct: 354 VSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVA 413

Query: 459 KDVSK 463
           ++  +
Sbjct: 414 RNAEE 418