Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  121 bits (304), Expect = 5e-32
 Identities = 87/317 (27%), Positives = 159/317 (50%), Gaps = 36/317 (11%)

Query: 159 MVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLE- 217
           +  DL   + +L   L    +++  A  T    AD  ++    A D+  K Q  ++Q   
Sbjct: 248 IAKDLNGVVNHLKGIL----KNIAEAASTLGDSADELNEFTRQANDRMFKQQSETEQTAT 303

Query: 218 ATSEITSAVTDAADDTVTAAIEI---EENSEMGVKKVENAIETMQSITNVIENLGKAIQE 274
           A +E+T+AV + A  + +AA      +E++  G   V+ +I +M  + + I+     I E
Sbjct: 304 AMNEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMSVLASQIQGTAAVIGE 363

Query: 275 LGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKS 334
           L  ES+ I  V  +IK +AEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA+   +S
Sbjct: 364 LATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTSES 423

Query: 335 VEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSI 394
             +I   I  + + V++ +       + +++G+  +D  N       ES       +  I
Sbjct: 424 TREIESMIESLQQGVKSAV-------NSMEQGIAQVDNAN-------ESTNAAGSALQDI 469

Query: 395 KVNAERAVNNVETALKDSQDIASISEEFAATAEELTAS-------AEEQSRIMNEIDDAI 447
                  V +V++  + +  IA+ ++E +  AE +  S       A+E ++  N++ +A+
Sbjct: 470 -------VASVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAV 522

Query: 448 EEITKSSEQISKDVSKF 464
            ++ + +  +   V  F
Sbjct: 523 HQLAQLAGHMRTQVGTF 539



 Score = 47.8 bits (112), Expect = 9e-10
 Identities = 27/142 (19%), Positives = 64/142 (45%)

Query: 155 NVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSD 214
           N+  +++ +K   E  N   L A  +  RA E     A  A +V T A   S   +++  
Sbjct: 370 NIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTSESTREIES 429

Query: 215 QLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQE 274
            +E+  +   +  ++ +  +       E++      +++ + ++ SIT +  ++  A  E
Sbjct: 430 MIESLQQGVKSAVNSMEQGIAQVDNANESTNAAGSALQDIVASVDSITQLNTHIATAADE 489

Query: 275 LGNESKKINEVTVLIKDVAEQT 296
               ++ IN+  + I D+A+++
Sbjct: 490 QSCVAESINQSIIAISDIAQES 511



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 43/201 (21%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 151 NAIVNVS-TMVNDLKKQIEYLNA---ELLKAKEDLVRAEETSEQVADAASQVATAAADQS 206
           N+IV  S + ++ L  QI+   A   EL    +++ R  +  + +A+  + +A  AA ++
Sbjct: 337 NSIVQQSISSMSVLASQIQGTAAVIGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEA 396

Query: 207 AKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIE 266
           A+     +Q    + +   V   A  T  +  EIE   E   + V++A+ +M+     ++
Sbjct: 397 AR---AGEQGRGFAVVADEVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVD 453

Query: 267 N-------LGKAIQELGNESKKINEVTVLIKDVAEQTGLLA--LNASIEAARAGDAGKGF 317
           N        G A+Q++      I ++   I   A++   +A  +N SI A          
Sbjct: 454 NANESTNAAGSALQDIVASVDSITQLNTHIATAADEQSCVAESINQSIIA---------I 504

Query: 318 AVVASEIKSLAEEIKKSVEDI 338
           + +A E    A ++ ++V  +
Sbjct: 505 SDIAQESTQAANDLSEAVHQL 525