Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  118 bits (296), Expect = 5e-31
 Identities = 85/323 (26%), Positives = 163/323 (50%), Gaps = 47/323 (14%)

Query: 135 RANTDRKYNALQVTTNNAIVN----VSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQ 190
           R   D+ +      T+N + +    V+TM  +LK  IE L + +            T   
Sbjct: 352 RGELDQHWQTSPADTHNEVDHIRNSVATMAGNLKTLIESLKSSVT-----------TLGT 400

Query: 191 VADAASQVATAAADQSAKLQDVSDQLE-ATSEITSAVTDAADDTVTAAIE---IEENSEM 246
           +A+ A Q+A    D++  L   +DQ+  A  E+++++ D A+ +   A +   ++  ++ 
Sbjct: 401 MAEDARQIAAQNGDEATALMAQTDQIATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKE 460

Query: 247 GVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIE 306
           G K+++  +  +  ++ V+     A++++  ES+ I++VT +I  +AEQT LLALNA+IE
Sbjct: 461 GQKRLDGMVADLGRLSEVLAASHDAVEQVSKESEAISQVTEVINSIAEQTNLLALNAAIE 520

Query: 307 AARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKG 366
           AARAG+ G+GFAVVA E+++LA   + S+++I++TI  +  KV +T    +    E+ + 
Sbjct: 521 AARAGEQGRGFAVVADEVRTLASRTQSSIQEISKTIGNLQDKVRSTA-AQMKKAHELGQS 579

Query: 367 VIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATA 426
                 + G      E ++T + +I                      D+A++S   A+  
Sbjct: 580 CAEQGSITG------EELDTITGRIG---------------------DLATVSASIASAT 612

Query: 427 EELTASAEEQSRIMNEIDDAIEE 449
           ++ +  AE+ +R ++ I D   E
Sbjct: 613 QQQSTVAEDITRNLHLISDLARE 635



 Score = 49.7 bits (117), Expect = 3e-10
 Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 48/330 (14%)

Query: 38  ILFVVFIVSIVISTAIGYVILKKTCLN-----KVDNFLHSSSKITGKEYEHCDEEM---- 88
           ILF+   +S V+  A+  +   KT L      ++D    +S   T  E +H    +    
Sbjct: 322 ILFITLSLSWVLLRALKPLTDLKTQLEGLGRGELDQHWQTSPADTHNEVDHIRNSVATMA 381

Query: 89  --FKTVISDFEKLKKDENSLKTYKKDVSNTFSELHTIFKSLEQGD--FTIRANTDRKYNA 144
              KT+I   E LK    +L T  +D             + + GD    + A TD+   A
Sbjct: 382 GNLKTLI---ESLKSSVTTLGTMAEDARQI---------AAQNGDEATALMAQTDQIATA 429

Query: 145 LQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAAD 204
           ++   + +I +V+   +D  +Q + +++    AKE   R +     VAD        AA 
Sbjct: 430 IE-EMSTSIRDVAEHSSDGAQQSQSVDSA---AKEGQKRLDG---MVADLGRLSEVLAAS 482

Query: 205 QSAKLQDVSDQLEATSEITSAVTDAADDT----VTAAIEIEENSEMG------VKKVEN- 253
             A ++ VS + EA S++T  +   A+ T    + AAIE     E G        +V   
Sbjct: 483 HDA-VEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTL 541

Query: 254 AIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDA 313
           A  T  SI  + + +G    ++ + + ++ +   L +  AEQ  +          R GD 
Sbjct: 542 ASRTQSSIQEISKTIGNLQDKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGD- 600

Query: 314 GKGFAVVASEIKSLAEEIKKSVEDINRTIN 343
               A V++ I S  ++     EDI R ++
Sbjct: 601 ---LATVSASIASATQQQSTVAEDITRNLH 627