Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (297), Expect = 3e-31
 Identities = 100/371 (26%), Positives = 184/371 (49%), Gaps = 53/371 (14%)

Query: 107 KTYKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKKQ 166
           ++  K +++  ++LHTI    +  D T+           +    + +  +ST +ND+ + 
Sbjct: 211 RSVMKPINHIRTQLHTI---QQDSDLTV---------TFEQLNKDELGLISTGLNDVFRH 258

Query: 167 IEYLN---AELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEIT 223
           +  +    AE   +  D   A     Q+++A  Q   A  +Q+A          A +E+T
Sbjct: 259 LRGILKGVAEAANSVSDSALALNEFTQISNARIQQQQAETEQTAT---------AMNEMT 309

Query: 224 SAVTDAADDTVTAAIEIEENSEM----GVKKVENAIETMQSITNVIENLGKAIQELGNES 279
           + V + A  T TAA +   N++     G   V+ +I +MQ+++  I++  + I  L +ES
Sbjct: 310 ATVNEVAQST-TAAADSARNADRFAANGNDIVQLSISSMQALSMQIQSTSEVITHLSHES 368

Query: 280 KKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDIN 339
           + I  V  +IK +AEQT LLALNA+IEAARAG+ G+GFAVVA E++SLA+  +++ ++I 
Sbjct: 369 QHIGSVLSVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQEATQEIE 428

Query: 340 RTI----NGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIK 395
             I    +GVN  V A           +D G+  +D+ N    K  E+++     ++   
Sbjct: 429 TMIETLQSGVNEAVTA-----------MDVGIKQVDDANQQTNKAGEALQEIVASVD--- 474

Query: 396 VNAERAVNNVETALKDSQDIA-SISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSS 454
            N      ++ TA ++   +A SI+    A ++  + S E       E+  +I ++T  +
Sbjct: 475 -NITEMNTHIATAAEEQSSVAESINRSIIAISDIASQSTESAL----ELGHSIAQLTSLA 529

Query: 455 EQISKDVSKFK 465
           + + + V+ F+
Sbjct: 530 DSMRQQVTTFR 540