Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  117 bits (292), Expect = 1e-30
 Identities = 93/363 (25%), Positives = 166/363 (45%), Gaps = 76/363 (20%)

Query: 117 FSELHTIFKSLEQG--DFTIRANTDRK---------YNALQVTTNNAIVNVSTMVNDLKK 165
           F EL  + KS+ +G  D ++R +  R+         YN      +  + +VS   NDL +
Sbjct: 315 FGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTLQSVSATANDLFQ 374

Query: 166 QIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSA 225
            +E ++ +    + ++       EQVA A  ++   A                  EI S+
Sbjct: 375 AVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTA-----------------QEIASS 417

Query: 226 VTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEV 285
             +AA++   A    +++   G + V+N I ++ S++  +    + + +L  ++  I+ V
Sbjct: 418 ANNAAENAQVA----DQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTV 473

Query: 286 TVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGV 345
             +I+ V+EQT LLALNA+IEAARAG+ G+GFAVVA E+++LA     S EDI   I  +
Sbjct: 474 LEVIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKL 533

Query: 346 NRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNV 405
             K                                      T+E +N+I  +  ++  + 
Sbjct: 534 QAK--------------------------------------TTEVVNAIGQSTNQSQQSQ 555

Query: 406 ETALKDSQDIASISEEFAATAE---ELTASAEEQSRIMNEID---DAIEEITKSSEQISK 459
           + A    + + SI+E   A +E   ++  + EEQS ++ EI+    AI +I++SS  + +
Sbjct: 556 QEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEINPHVTAIADISRSSSDVVR 615

Query: 460 DVS 462
             S
Sbjct: 616 QTS 618