Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  121 bits (303), Expect = 9e-32
 Identities = 95/360 (26%), Positives = 166/360 (46%), Gaps = 40/360 (11%)

Query: 113 VSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKKQIEYLNA 172
           + N   +    FK + +GD T   +  R+  A Q+     +  ++TM   LK  ++ +  
Sbjct: 369 IVNPMRQAIDTFKLIAEGDLTSDIDISRRDEAGQL-----LCQLATMQATLKAMLDQIQE 423

Query: 173 ELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAAD- 231
                      + +  ++ +   S+VA  AA    +L DV     AT E + +V + A  
Sbjct: 424 A----------SRQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGH 473

Query: 232 --DTVTAAIEIEENSEMGVKKVENAIETMQSITN----VIENLGKAIQELGNESKKINEV 285
             +T +AA    +NSE  V++    I    ++TN     +      + EL     +I ++
Sbjct: 474 AGETASAA----QNSERLVEESNTQIGRSMAVTNRVVEAVTGSSATLHELNTAIDQIGQI 529

Query: 286 TVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGV 345
           T +IK++A+QT LLALNA+IEAARAG+AG+GFAVVA E++ LAE    S  DI   I  +
Sbjct: 530 TQVIKEIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTTTSTADITGNIGAI 589

Query: 346 NRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNV 405
                  ++       EV++G+  + E         E +   S++++++      A    
Sbjct: 590 QGATHEAVNRMEQAVREVEEGIGMMRESVAGL----EGITAASQQVSAMARQISEASQQQ 645

Query: 406 ETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFK 465
             A   SQ++    E  +   E+ TA+A+E  R       A E +  ++E +   ++ F+
Sbjct: 646 SIA---SQEVNGSMEHISVLIEQNTATAQEAQR-------ATEALVSTAEDLRAILASFR 695



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 50/270 (18%), Positives = 106/270 (39%), Gaps = 66/270 (24%)

Query: 251 VENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARA 310
           +E  +   Q I   +E    A+Q+L   S+K  ++   + +  ++     +NA+ +A +A
Sbjct: 239 LEKTLANRQQINAQLE----ALQKLPL-SEKERQLVEQLGEARKKFSAEGVNAARDALKA 293

Query: 311 GDAGKGFAVVASEI-----------KSLAEEIKKSVE-DINRT----------------- 341
           GD  +   ++ ++I           K+L +E+K S   D  R                  
Sbjct: 294 GDFHQASVLLLTKINPIYGQVQQAGKALVDELKASARADFERAQARYENILWAMALATLA 353

Query: 342 ----------------INGVNRKVEA---------TIDLGISGKDEVDKGVIAIDEVNGA 376
                           +N + + ++          T D+ IS +DE  + +  +  +   
Sbjct: 354 ALALAVVGGWLLVRAIVNPMRQAIDTFKLIAEGDLTSDIDISRRDEAGQLLCQLATMQAT 413

Query: 377 FLKIKESVETTSEKINSIKVNAERAVNNV----ETALKDSQDIASISEEFAATAEELTAS 432
              + + ++  S +++      E  V  V    +  L D Q IA+ +EEF+ + +E+   
Sbjct: 414 LKAMLDQIQEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGH 473

Query: 433 AEEQSRIMNEIDDAIEEITKSSEQISKDVS 462
           A E +      +  +EE   S+ QI + ++
Sbjct: 474 AGETASAAQNSERLVEE---SNTQIGRSMA 500