Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 607 a.a., methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  118 bits (295), Expect = 6e-31
 Identities = 88/347 (25%), Positives = 166/347 (47%), Gaps = 36/347 (10%)

Query: 143 NALQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAE-ETSEQVADAASQ---- 197
           N +  T  N I +++    +  +Q +   A   +A+E + +A   T E +  AA +    
Sbjct: 273 NTMVTTLKNNIADITEKQREAGRQADAARASTQQAEEAMAKAAVATKEGILTAAERLEGV 332

Query: 198 ---VATAAADQSAKLQDVS-----------DQLEATSEITSAVTDAADDTVTAAIEIEEN 243
              +  AA D S + +++S           +   A  E+ + V + A +   AA + E +
Sbjct: 333 VRAIDHAADDISRRSEEISRGTDTQMARINETATAMEEMNATVLEVARNAGRAADQTEAS 392

Query: 244 ---SEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLA 300
              ++ G   V   ++ MQ +  +  NL   +  LG +S+ I  V  +I D+A+QT LLA
Sbjct: 393 RTKADEGSGMVGQTVKAMQDLKGLASNLKDNMHRLGQQSEAIGHVMNVINDIADQTNLLA 452

Query: 301 LNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGK 360
           LNA+IEAARAGDAG+GFAVVA E++ LAE+   + +++  +I    + ++      ++G 
Sbjct: 453 LNAAIEAARAGDAGRGFAVVADEVRKLAEKTMGATKEVGDSI----KAIQDLARTNVTGM 508

Query: 361 DEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISE 420
           D+      A++ ++GA         ++ E +  I   A  A   V+     +++ ++ SE
Sbjct: 509 DD------AVNAIDGA----ARLSGSSGELLQEIVTMAHDAAGQVQAIATAAEEQSAASE 558

Query: 421 EFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKTE 467
           E   + EE+   A E   ++N  +  +  +   + ++ + +   K E
Sbjct: 559 EITRSVEEIDRIARETGTLVNATNTDLRNLADQAAELRRLIEGMKKE 605