Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis JJ

 Score =  406 bits (1044), Expect = e-117
 Identities = 218/398 (54%), Positives = 296/398 (74%), Gaps = 4/398 (1%)

Query: 68  NFLHSSSKITGKEYEHCDEEMFKTVISDFEKLKKDENSLKTYKKDVSNTFSELHTIFKSL 127
           N+ + ++  TG E +   +  F  +  + + L K   ++   K +++N  + +  +  ++
Sbjct: 335 NYDYKTNVKTGDELQELSDS-FNGMAGNIKNLMK---TMDMDKVELANLLNNVTNVMNNV 390

Query: 128 EQGDFTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEET 187
            +GDFT RA+ + + N LQ   N A+ NV+ ++ DL+++++ LN ++ K +++L  AEET
Sbjct: 391 AKGDFTARADENTENNTLQKAINTAVANVAQLIKDLREEVDLLNIQVQKVEDELKSAEET 450

Query: 188 SEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMG 247
           + QV +AA+QVA A++DQS+KLQ+ SDQLE T  +   V  AA++TV +A EI ENSE G
Sbjct: 451 ATQVTEAATQVAEASSDQSSKLQEASDQLENTYGVAKEVYSAAEETVKSAEEISENSENG 510

Query: 248 VKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEA 307
           V+KVENAI  MQSITNVI+ LGKAIQ LG++ KKIN+VT LIKD+AEQTGLLALNASIEA
Sbjct: 511 VEKVENAISRMQSITNVIDELGKAIQMLGDDGKKINDVTGLIKDIAEQTGLLALNASIEA 570

Query: 308 ARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGV 367
           ARAGDAGKGFAVVASEIK+LAEEIKKSVEDINRTI+GVNR++E T+DLG+ GKDEVDKGV
Sbjct: 571 ARAGDAGKGFAVVASEIKALAEEIKKSVEDINRTIDGVNRRIEDTMDLGLKGKDEVDKGV 630

Query: 368 IAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAE 427
           IAIDEVN A L+IK SV   + KIN IK  A+ A +N E ALK++QDIA++SEEF ATAE
Sbjct: 631 IAIDEVNDALLRIKGSVNDAAIKINDIKKGAQSATDNTEGALKNAQDIAALSEEFTATAE 690

Query: 428 ELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFK 465
           E+TAS EE + I+ EI    EE+T+ +E+++K   +FK
Sbjct: 691 EVTASTEELNSIIEEIRGIAEEVTQVAERVTKKSGQFK 728