Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 667 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (300), Expect = 2e-31
 Identities = 97/373 (26%), Positives = 187/373 (50%), Gaps = 74/373 (19%)

Query: 120 LHTIFKSLE---QGDFTIR---ANTDRKYNALQVTTNNAIVNVSTMVNDLKKQIEYLNAE 173
           LH + + +E    GDF+     +  D +    ++TT+     VSTM ++L++ I  L   
Sbjct: 341 LHALQQHMEIIGSGDFSHHLPPSAFDSQNEVDKITTS-----VSTMSSELRQLISALQTS 395

Query: 174 LLKAKEDLVRAEETSEQVADAAS-------QVATAAADQSAKLQDVSDQLEATSEITSAV 226
           +   ++   +A+  ++Q  + A        Q+ATA  + S  ++DV++  +         
Sbjct: 396 VQSIEQQASKAQRIAKQNGEEAQALMQQTDQIATAIEEMSTSIRDVANHAQ--------- 446

Query: 227 TDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVT 286
            + A+      I  +E  +   + V++ ++  Q + N  +    A+ ++  ES+ I++VT
Sbjct: 447 -EGANQNQQVDIAAKEGQQQQTRLVQDLLKLSQQLNNSHQ----AVDKVSQESEAISKVT 501

Query: 287 VLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVN 346
            +I  +AEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA+  + S+ +I +TI+ + 
Sbjct: 502 EVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQTSILEIGQTIDKLQ 561

Query: 347 RKVEATI-------DLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAE 399
            +V+ T         LGI+  ++ ++    ++E+N                       AE
Sbjct: 562 TQVKTTTSQMAQSHQLGIASANQGEETGHQLEEINRRI--------------------AE 601

Query: 400 RAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQIS- 458
            A++        S++IAS +E+ ++ A+E+T +  + S + NE +    E   S+ ++S 
Sbjct: 602 LAIS--------SRNIASATEQQSSVAQEITHNLHQISELANEGEHRAAETVNSANELSS 653

Query: 459 ------KDVSKFK 465
                 + +S+FK
Sbjct: 654 LAIALKQQISQFK 666