Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 543 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (300), Expect = 1e-31
 Identities = 76/309 (24%), Positives = 157/309 (50%), Gaps = 8/309 (2%)

Query: 147 VTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVR-----AEE---TSEQVADAASQV 198
           +   N +  +    ND   ++++  A   K+ ++ +      +EE   ++ Q++ AA QV
Sbjct: 229 IARGNLVDTIPPSGNDELTKLQHSMASTRKSLKETINTVLHISEELGSSAAQLSSAAQQV 288

Query: 199 ATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETM 258
            T++  Q+      +  +E  S   + ++D+A+     A+     ++ G  +VE     +
Sbjct: 289 MTSSEMQAQATACSAASIEEMSTSIAQLSDSANSANEQAMTSGNLAQQGEHQVEGVSREV 348

Query: 259 QSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFA 318
           +++T+ I      I++L ++  K+ ++TV+IK VA+QT LLALNA+IEAARAGD G+GFA
Sbjct: 349 RAVTDAINQSTTQIRQLADDVTKVGQITVMIKGVADQTNLLALNAAIEAARAGDMGRGFA 408

Query: 319 VVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFL 378
           VVA E++ LAE   K+ ++I+  I+ V  K   T+         ++   +   + +    
Sbjct: 409 VVADEVRQLAERTTKATQEIDSMISSVQSKAMETVSTMDKYVQSIENVRLNTAQASDLMA 468

Query: 379 KIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSR 438
           K+ +S +     +  I V      +  +   +  +++ ++S+E  + +E +   A   ++
Sbjct: 469 KVDQSSQAVVGLMGEINVMLHEQSSASQLIAQSVEEVNNMSQENVSASECVNGEAVHLTQ 528

Query: 439 IMNEIDDAI 447
           I+ E+  ++
Sbjct: 529 IVGELKKSV 537



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 75/375 (20%), Positives = 137/375 (36%), Gaps = 71/375 (18%)

Query: 132 FTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKK---QIEYLNAEL----LKAKED---- 180
           F +  +  +  + + V  NN  +N    + D+     Q  Y + EL    ++AK+     
Sbjct: 25  FVMGLSHKQSADTINVMLNNMYLNQLVPITDVANANMQAIYHHRELFNYVIEAKQSEMDR 84

Query: 181 ---LVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAA 237
              ++   ET         +V     D++  L D   Q          + DA+      A
Sbjct: 85  IAGVMDKYETQMMALLNKYRVTELTPDETRLLADFDRQWPPYKAAAKKMMDASYRNDNEA 144

Query: 238 IEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQ-- 295
                 SE+     + A  T+ +I N   +LGK         K  ++  V++  + ++  
Sbjct: 145 AMQLMKSEV-TPTFQQADATLSAIVNKNVDLGK---------KAYDDSDVVVAQLGQEFV 194

Query: 296 --TGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATI 353
              GL+ + A+I  A               I+S+   + ++V D++    G         
Sbjct: 195 ITMGLVLVIAAISGALV-------------IRSILAPLDQTVTDLSHIARG-----NLVD 236

Query: 354 DLGISGKDEVDK-----------------GVIAIDEVNGA----FLKIKESVETTSEKIN 392
            +  SG DE+ K                  V+ I E  G+         + V T+SE   
Sbjct: 237 TIPPSGNDELTKLQHSMASTRKSLKETINTVLHISEELGSSAAQLSSAAQQVMTSSEMQA 296

Query: 393 SIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQ----SRIMNEIDDAIE 448
                +  ++  + T++    D A+ + E A T+  L    E Q    SR +  + DAI 
Sbjct: 297 QATACSAASIEEMSTSIAQLSDSANSANEQAMTSGNLAQQGEHQVEGVSREVRAVTDAIN 356

Query: 449 EITKSSEQISKDVSK 463
           + T    Q++ DV+K
Sbjct: 357 QSTTQIRQLADDVTK 371