Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  113 bits (282), Expect = 2e-29
 Identities = 88/347 (25%), Positives = 155/347 (44%), Gaps = 52/347 (14%)

Query: 115 NTFSELHTIFKSLEQGDFTIRANTDRKYN--ALQVTTNNAIVNVSTMVNDLKKQIEYLNA 172
           N   ++  + + L  GD T +     +    AL    +  I ++  M++D+ +  E+++ 
Sbjct: 202 NIVHQIKRVVEHLADGDLTQKTQISGQNELCALGADLDRVIDHLRHMISDIAQASEHMSD 261

Query: 173 ELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADD 232
           ++ +            +  A    QV TA  + SA   +V+    + +  T    + AD 
Sbjct: 262 QIGQLNVQSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADK 321

Query: 233 TVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDV 292
           +               K VE A  T+ ++   ++     I E+   ++ I  +  +I D+
Sbjct: 322 SK--------------KAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDI 367

Query: 293 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTI----NGVNRK 348
           A+QT LLALNA+IEAARAG+ G+GFAVVA E+++LA   + S  +IN+ +     G N  
Sbjct: 368 ADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERLRTGANSA 427

Query: 349 VEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETA 408
           V A  +   S +D  D   +           + ES+ET +  +                 
Sbjct: 428 VNAMDETKQSCQDAADTTTL-----------VTESLETLTTYV----------------- 459

Query: 409 LKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSE 455
                DI  +S + A  AEE +A +EE +R +N I + +EE+ +S +
Sbjct: 460 ----FDINGLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGK 502



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 14/197 (7%)

Query: 176 KAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDT-- 233
           +A E   ++++  EQ A+    +       +  + ++++     + I   + D AD T  
Sbjct: 314 QANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNL 373

Query: 234 --VTAAIEIEENSEMG------VKKVENAIETMQSITNVIENLGKAIQELGNES-KKINE 284
             + AAIE     E G        +V       Q+ T  I  + + ++   N +   ++E
Sbjct: 374 LALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERLRTGANSAVNAMDE 433

Query: 285 VTVLIKDVAEQTGLLALNASIEAARAGDAG---KGFAVVASEIKSLAEEIKKSVEDINRT 341
                +D A+ T L+  +         D        A  A E  +++EEI +++  I   
Sbjct: 434 TKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIREM 493

Query: 342 INGVNRKVEATIDLGIS 358
           +  +N+  +AT++   S
Sbjct: 494 VEELNQSGKATLNSATS 510