Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  126 bits (317), Expect = 2e-33
 Identities = 88/331 (26%), Positives = 178/331 (53%), Gaps = 37/331 (11%)

Query: 139 DRKYNALQV-TTNNAIVNVS-TMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAAS 196
           D+  NA+Q+  T N    ++ T  ++L      +N  +   +  L  A  +++ V+ AAS
Sbjct: 211 DQVNNAMQIIATGNLTPQLAVTGKDELAALAHNINQSMASIRTALAEANHSADNVSQAAS 270

Query: 197 QVATAAADQSAKLQDVSDQLE----ATSEITSAVTDAADDTVTAAIEIEENSE---MGVK 249
           ++A+ A + +  + +  DQL     A +E+++ + D A++  + A + +E +    +G K
Sbjct: 271 RIASTAEETNQAVNNQRDQLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLGDK 330

Query: 250 KVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAAR 309
            V  +++ + ++   +E   + + +L  E  +I+EVT +I  +++QT LLALNA+IEAAR
Sbjct: 331 DVHASVDGIHALAKEVEQATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAAR 390

Query: 310 AGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIA 369
           AG+ G+GFAVVA E++ LA   ++S E+I  TI+ + ++  +  +   + +D  +K    
Sbjct: 391 AGEQGRGFAVVADEVRQLASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAEK---- 446

Query: 370 IDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEEL 429
                        SV+ +++  N + +        + T +K   D+A+   + A  AEE 
Sbjct: 447 -------------SVDQSTKAGNDLSL--------IVTHIKHVSDMAT---QIATAAEEQ 482

Query: 430 TASAEEQSRIMNEIDDAIEEITKSSEQISKD 460
           +A AEE +R +  I+ +  E+++S+  ++++
Sbjct: 483 SAVAEEMNRNVCGINSSALEVSESATYLAQE 513



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 34/195 (17%), Positives = 82/195 (42%), Gaps = 6/195 (3%)

Query: 160 VNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEAT 219
           ++ L K++E    ++ K KE++++  E +  ++  + Q    A + + +     +Q    
Sbjct: 339 IHALAKEVEQATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAARAGEQGRGF 398

Query: 220 SEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNES 279
           + +   V   A  T  +  EI+    +  ++  +A   M +  ++ E   K++ +     
Sbjct: 399 AVVADEVRQLASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAE---KSVDQSTKAG 455

Query: 280 KKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGK---GFAVVASEIKSLAEEIKKSVE 336
             ++ +   IK V++    +A  A  ++A A +  +   G    A E+   A  + +  E
Sbjct: 456 NDLSLIVTHIKHVSDMATQIATAAEEQSAVAEEMNRNVCGINSSALEVSESATYLAQESE 515

Query: 337 DINRTINGVNRKVEA 351
            +      +N K+ A
Sbjct: 516 SLAELSLNLNNKLAA 530



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 17/115 (14%)

Query: 370 IDEVNGAFLKIK------ESVETTSEKINSIKVNAERAVNNVETALKDSQ----DIASIS 419
           +D+VN A   I       +   T  +++ ++  N  +++ ++ TAL ++     +++  +
Sbjct: 210 LDQVNNAMQIIATGNLTPQLAVTGKDELAALAHNINQSMASIRTALAEANHSADNVSQAA 269

Query: 420 EEFAATAEELTASAEEQ-------SRIMNEIDDAIEEITKSSEQISKDVSKFKTE 467
              A+TAEE   +   Q       +  MNE+   I ++  ++E  +KD  +   E
Sbjct: 270 SRIASTAEETNQAVNNQRDQLAQLATAMNEMSATIADVANNAESTAKDTKEATRE 324