Pairwise Alignments

Query, 154 a.a., chemotaxis protein CheD from Methanococcus maripaludis S2

Subject, 210 a.a., CheD, stimulates methylation of MCP proteins (RefSeq) from Shewanella loihica PV-4

 Score = 79.0 bits (193), Expect = 4e-20
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 1   MVLKVKMGDIGVAKSPESIETLLGSCVAIILYDRGKKIGGVAHVMLPKSR-----NSSEK 55
           +V +V  G+  V    E I T LGSCVA  ++D    IGG+ H +LP+ +     +    
Sbjct: 28  VVARVDPGNFYVTAHDELIFTRLGSCVAACIWDPLLGIGGLNHFLLPERQLHEDWHQLTS 87

Query: 56  NPGKYANTAIPELINRMAKLGARKDKLTTKLAGGAAMFKCNSNTIDVGKKNIEASREEVK 115
              +Y N A+ +LIN +  LG  +++L  K+ GGA M    ++ ++VG+ NI   +  +K
Sbjct: 88  YTCRYGNWAMEQLINSILSLGGMRNRLKAKVFGGAQM--TATSVLNVGESNISFVKNYLK 145

Query: 116 KMGLRIASEDLGGDTGRTITLSLKDGSV-LVRTGSE 150
             G+ I SEDLGG   R +      G V L+R   E
Sbjct: 146 TEGIEIVSEDLGGPWPRKVLFHPNSGKVKLMRLSPE 181