Pairwise Alignments

Query, 154 a.a., chemotaxis protein CheD from Methanococcus maripaludis S2

Subject, 208 a.a., chemotaxis protein CheD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.6 bits (161), Expect = 2e-16
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 7/155 (4%)

Query: 3   LKVKMGDIGVAKSPESIETLLGSCVAIILYDRGKKIGGVAHVMLPKSRNSSEK---NPGK 59
           +K+  G+    +    I T+LGSCVA+ LYD   KIGG+ H +LP    ++        +
Sbjct: 28  VKILPGEYFATRENTMIVTVLGSCVAVCLYDPVLKIGGMNHFLLPNDNVTAPNMMTESAR 87

Query: 60  YANTAIPELINRMAKLGARKDKLTTKLAGGAAMFKCNSNTIDVGKKNIEASREEVKKMGL 119
           Y   A+  LIN + KLGAR++ L  K+ GG  + +      ++G++N E   + ++   +
Sbjct: 88  YGVFAMELLINHVLKLGARRNALEAKVFGGGNVLR-GLTVQNIGERNAEFVLDYLQMEQI 146

Query: 120 RIASEDLGGDTGRTITLSLKDGSVLVRTGSELKTI 154
            + + DL     R +    + G V VR   ++KTI
Sbjct: 147 PVIAADLLDIYPRKVYFFPETGLVKVR---KIKTI 178