Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 754 a.a., Sensor histidine kinase/response regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  220 bits (561), Expect = 2e-61
 Identities = 123/397 (30%), Positives = 215/397 (54%), Gaps = 5/397 (1%)

Query: 529 ATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANF----TQIATKYDLKELHN 584
           AT ++     S+       +N+   D  ++L  +  +  A      TQ        EL  
Sbjct: 208 ATMQRLKRQQSTGLRALEELNVHLKDHALSLQAQEALGDARRLLAETQQLLAQKTAELDE 267

Query: 585 AVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRT 644
              + +  A  L +  +  RM P A V +   R VRD  ++LDK++  EIEG   ++DR 
Sbjct: 268 FAWQASQRAQVLYDTALACRMRPFADVLSGQARMVRDLGRSLDKQVRLEIEGEKTQVDRD 327

Query: 645 VLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGI 704
           VL++L  PLTHL+RN++DHGIE  ++RI  GKP +G+++L A+ Q   + + + DDG G+
Sbjct: 328 VLEKLEAPLTHLLRNAVDHGIEPPEQRILAGKPAEGVIRLRASHQAGLLVLELADDGAGV 387

Query: 705 DPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKI 764
           D E +R+   E+GL  ++ A  L++ E +  +F PGFS  + V++VSGRGVG+D V+  +
Sbjct: 388 DLERVRRSIVERGLSPEQTAASLSEEELLTFLFLPGFSLRDKVTEVSGRGVGLDAVQHMV 447

Query: 765 ESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQI 824
             L G+V +    G+G+   L +PLT++++++L++ + +  YA PL  +  +  +  E I
Sbjct: 448 RQLRGAVVLEQTAGEGSRFHLEVPLTLSVVRSLVVEVGDEAYAFPLAHIERMCDLAPEDI 507

Query: 825 KNLEGQEAIIYRNHILPVIWLKDALNTSGFSDSDD-LYVVVVEKNKGKVGMILDEVIGRD 883
             +EG++   +    + ++     LN      S+  L VVV+ + +   G+ ++  IG  
Sbjct: 508 VQVEGRQHFWHEGRHIGLVAASQLLNRPATQGSNQTLKVVVIRERETIYGVAVERFIGER 567

Query: 884 EIVVKPLTGILKNINGLAGATILGDGRVALILDLNNI 920
            +VV PL   L  +  ++   +L DG V LI+D+ ++
Sbjct: 568 TLVVLPLDERLGKVQDISAGALLDDGSVVLIVDVEDL 604



 Score = 56.2 bits (134), Expect = 7e-12
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 9   ELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHH 68
           ELF  EAE  +Q L+  ++ LE  P  ++  +    R+AH+LKG+AR +G +   S+ H 
Sbjct: 13  ELFSLEAEAQVQVLSAGLLALERDPTQAD-YLESCMRAAHSLKGAARIVGVDAGVSVAHV 71

Query: 69  MEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVI 123
           MED L   ++ ++ +  E +D L +  D L  +    + G    + D+D+ V ++
Sbjct: 72  MEDCLVSAQEQRLVLGAEHIDALLQGTDLLMRI---ATPGNSVGAPDIDAYVALM 123