Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 752 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  322 bits (826), Expect = 4e-92
 Identities = 159/390 (40%), Positives = 259/390 (66%), Gaps = 1/390 (0%)

Query: 529 ATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVGR 588
           A +   AE  +S+   TVRV+  +LD++MN+VGE+V+ R    ++      + +  AV  
Sbjct: 351 AAAAAPAEKPASEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSQDEAMSKAVSN 410

Query: 589 LNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDE 648
           L+++  +LQ  VM  RM P+  VF RFPR VRD A+ L KEI+ E+ G + +LD+ +++ 
Sbjct: 411 LDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEA 470

Query: 649 LAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEA 708
           LA+PL HL+RN++DHGIE  +ER   GK   G + L A ++ D + + I DDGKG+DP  
Sbjct: 471 LADPLVHLVRNAVDHGIESPEEREASGKVRSGKVILAAEQEGDHILLSISDDGKGMDPNV 530

Query: 709 MRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLG 768
           +R  A ++G+  K+ A++L+D E  N+IF PGFST   +SDVSGRGVGMDVV++KI  L 
Sbjct: 531 LRSIAVKRGVMDKDAADRLSDTECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLN 590

Query: 769 GSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLE 828
           GS+ + S  G+G++I + +PLT+AI+ TL++ L    +A PL +V ++  ++  +   ++
Sbjct: 591 GSINIYSTKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVD 650

Query: 829 GQEAIIYRNHILPVIWLKDAL-NTSGFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVV 887
           GQE +I R+  LP+ +LK  L +++   +  + +VV++     ++G ++D+++G++E+V+
Sbjct: 651 GQEVVIVRDKALPLFYLKRWLVSSAAHVEQGEGHVVILSVGTQRIGFVVDQLVGQEEVVI 710

Query: 888 KPLTGILKNINGLAGATILGDGRVALILDL 917
           KPL  +L+   G++GATI GDGR+ALILD+
Sbjct: 711 KPLGKMLQGTPGMSGATITGDGRIALILDV 740



 Score = 79.7 bits (195), Expect = 6e-19
 Identities = 50/206 (24%), Positives = 105/206 (50%), Gaps = 11/206 (5%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L++ +VELE+ P+D++ ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLVEAGEILEQLSEQLVELESRPDDAD-LLNAIFRGFHTVKGGAGFLQLNELVE 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
             H  E++ D +R G+ +V+ E++D++ + LDA+ +M SEV +    T+     L+  + 
Sbjct: 66  CCHIAENVFDILRKGERRVDSELMDVVLEALDAVNSMFSEVRERSPITAA-TPELLAALA 124

Query: 125 SVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESSII------ 178
            + E   + E +        +P   A   + +     +  +  ++    E+ +       
Sbjct: 125 RLAEPQSADEAAPVAEPAVEEPVAEASGDITDNEFEQLLDSLNTVKAQAEAPVAPAAPAA 184

Query: 179 -LIEGQSNNSVVEKPENLDSVLNQMH 203
            + +G +++ + +     +S+L+Q+H
Sbjct: 185 PVADGVASDEITD--AEFESLLDQLH 208