Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 709 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  275 bits (704), Expect = 6e-78
 Identities = 153/390 (39%), Positives = 241/390 (61%), Gaps = 6/390 (1%)

Query: 528 DATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVG 587
           D T  + A+ +   +   +RV+  KLD+L+NLVGE++I  A     A +  + EL  A  
Sbjct: 303 DVTKSRGAKEARPAEGNLIRVDAGKLDQLINLVGELIIAGAGANLGAIQSGIGELIEATS 362

Query: 588 RLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLD 647
            L+ L  E+++  + +RM+ +   FNRF R VRD +K L K+I  ++ G++ ELD+TV++
Sbjct: 363 SLSRLVEEVRDCALTLRMVQIGGTFNRFQRVVRDVSKELGKDIALQVLGAETELDKTVVE 422

Query: 648 ELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPE 707
            + +PLTHL+RN++DHGIE +  R   GKPE+G ++L A  + + + I + DDG G++ +
Sbjct: 423 RIGDPLTHLVRNAMDHGIESSQLRRDRGKPEQGTVRLNAYHEANSIVIEVSDDGGGLNKQ 482

Query: 708 AMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESL 767
            +  KA E+GL +  E + L D + +N+IF PGFSTA+ VS++SGRGVGMDVV+  I +L
Sbjct: 483 RILAKAMERGLVA--EGQSLADGDILNLIFEPGFSTADQVSNLSGRGVGMDVVKRNIVAL 540

Query: 768 GGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNL 827
            GSV + SE G GT + + LPLT+AII   LI +    Y +PL  V + I +  +   + 
Sbjct: 541 RGSVNLESEEGVGTTVRIRLPLTLAIIDGFLIGVGNASYVVPLDLVEECIELSTD---DG 597

Query: 828 EGQEAIIYRNHILPVIWLKDALNTSGFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVV 887
             Q+ +  R  +LPV+ L++       +   +  +VVV     +VG+++D+++G  + V+
Sbjct: 598 SSQDFLDLRGSVLPVLRLREMFAIDEPNHGRE-NIVVVHYAGMRVGLVVDQLLGEFQTVI 656

Query: 888 KPLTGILKNINGLAGATILGDGRVALILDL 917
           KPL  I    +GL G TILG+G VALILD+
Sbjct: 657 KPLGKIFGTAHGLGGFTILGNGAVALILDI 686



 Score = 64.3 bits (155), Expect = 3e-14
 Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           +++     F+ E++E L  + + ++++E  P+D + I N +FR AHT+KGSA   GF  I
Sbjct: 2   NLDDVLRTFIAESQELLLLMEEALLQIEQAPDDVDTI-NALFRVAHTIKGSAGLFGFTPI 60

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGED 110
            + TH  E +LD +R  +++V+  +  L  +  D L T++  ++   D
Sbjct: 61  VAFTHVAESVLDRVRGHELRVDESLSALFLEVRDHLCTLIELLASHGD 108