Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 1980 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

 Score =  229 bits (583), Expect = 2e-63
 Identities = 155/512 (30%), Positives = 267/512 (52%), Gaps = 38/512 (7%)

Query: 436  LDEECLLKAVRAYM--VIKDLKEKGTVLETEP---PEEKIQEGTLGGNTVTIYYDSDESE 490
            L  + L+ A++A+             ++E  P   PE    +   G + V +      S 
Sbjct: 1326 LPADSLIDAIKAFTHPTADKAPTPAPLVEVAPVAKPEAAALQPDAGADMVKV------SA 1379

Query: 491  DDIKEIISKTPEITEFLVNVQKDTNNLKD-----NTKIKNTVDATSKKQAENS----SSK 541
            + + ++++   E + F   +++  N+ +       T I+   D   +   E      S +
Sbjct: 1380 ELLDDLVNLAGETSIFRGRIEQQVNDAQVALSEMETTIERMRDQLRRLDTETQGRILSRQ 1439

Query: 542  KSQTVRVNIEKLDKL-MNLVGEVV-INRANFTQIATKYDLKEL--------HNAVGRLNM 591
            + +  R+  E+ D L M+   ++  ++RA F   +   DLKE          N + +   
Sbjct: 1440 QVEAERLGYEEFDPLEMDRHSQLQQLSRALFESASDLLDLKETLEHCNHDAENLLQQQGR 1499

Query: 592  LATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAE 651
            + TELQE +M  RM+P   +  R  R VR  +  L K+++F +  ++ E+DR VL+ +A 
Sbjct: 1500 INTELQEGLMRSRMVPFERMLPRLKRIVRQVSSELSKDVEFIVGNAEGEMDRNVLERMAA 1559

Query: 652  PLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRK 711
            PL H++RN++DHG+E A+ R   GKPE+G + L  +R+   +   IRDDG G+  +A+R+
Sbjct: 1560 PLEHMLRNAVDHGLESAEVRRAAGKPEQGRITLDLSREGGDIIFDIRDDGAGVPLDAVRR 1619

Query: 712  KAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSV 771
            KA ++GL   +    ++D + +  I  PGFSTAE ++ +SGRGVGMDVV  ++  LGGS+
Sbjct: 1620 KAIKRGLL--DPGSDMSDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSM 1677

Query: 772  TVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQE 831
             ++S  G G    + LP T+++ + L+++  E  YA+PL ++  ++ V   +++     +
Sbjct: 1678 VIDSVPGHGVHFRIRLPFTVSVNRALMVQCAEDQYAIPLNTIEGIVCVLPFELEGYYQLD 1737

Query: 832  AIIYR--NHILPVIWLKDALNTSG----FSDSDDLYVVVVEKNKGKVGMILDEVIGRDEI 885
              +Y        + +L + L TS        S  L V++V+ N+ ++ + +D   G  EI
Sbjct: 1738 PPLYEYAGQRYELCYLGELLKTSVRPKLLGQSLPLPVLLVQCNERRIAVQVDATTGTREI 1797

Query: 886  VVKPLTGILKNINGLAGATILGDGRVALILDL 917
            VVK L      + GL+GATILGDGRV LILDL
Sbjct: 1798 VVKSLGPQFAAVQGLSGATILGDGRVVLILDL 1829



 Score = 50.8 bits (120), Expect = 8e-10
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 5    EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
            ++   +F+ EA + L+S  Q +    N PE S   ++ + R  HTLKG AR      +  
Sbjct: 1078 DEIVSIFLEEAVDILESAGQALQRWLNDPE-SAAPLSSLQRDLHTLKGGARMAEVGPVGD 1136

Query: 65   LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
            L H +E + + + D +   +P +  LL +  D L  ++ ++ + +  +  D  +L+E I 
Sbjct: 1137 LAHELESLYEGLVDRRFSHSPALGVLLQQSHDRLAMLLEQLQNHQPLS--DPGTLIEAI- 1193

Query: 125  SVKEKYLSGENSKEDSLDYSDPNEVAKKQVE 155
               +++  G  S  + ++ +  NE A    E
Sbjct: 1194 ---QQFRQGTGSTAEVVEAATANEAASHDPE 1221



 Score = 50.1 bits (118), Expect = 1e-09
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 6   QYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSL 65
           + +E+F+ E +E L  L + +      P DS  +++ + R+ HTLKGS R +    +  L
Sbjct: 635 ELREVFLEETDEVLDILREYLPRWVASP-DSTSVLSELRRAFHTLKGSGRMVRALVLGEL 693

Query: 66  THHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSL 119
              +E++L+ + +  ++  P +  LL + L  L  +++E +        DVD L
Sbjct: 694 AWALENLLNRVLERSVEPGPPVYQLLDEVLQLLPELIAEFAANTQRQRDDVDRL 747



 Score = 50.1 bits (118), Expect = 1e-09
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 9    ELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHH 68
            E+F+ E  + + S    +   +  P++ + +  ++ R  HTLKG AR +    I  L H 
Sbjct: 1224 EIFLEEGFDIIDSSGAALSRWQADPQNRQEMETLL-RDLHTLKGGARMVEIAPIGDLAHE 1282

Query: 69   MEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIKS 125
            +E + + +  G +   P + DLL +  D L  M+     G+    +  DSL++ IK+
Sbjct: 1283 LEFLYEGLSTGLLHAIPALFDLLQRSHDRLAQMLDATRAGQPV--LPADSLIDAIKA 1337



 Score = 40.4 bits (93), Expect = 1e-06
 Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 30/246 (12%)

Query: 6   QYKELFMTEAEEHLQSLNQNMVEL-ENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           Q  E+F  EAE HLQSL++ +    E+ P  +    + + R+ HTLKGSA   G   I+ 
Sbjct: 775 QLLEIFRNEAETHLQSLDRFLDRAAEHVPLQAS---DELQRALHTLKGSASMAGVLPIAE 831

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
           L    + +    +  +I ++ + V+LL +  + L   + ++S          + L+   +
Sbjct: 832 LAAPFDHLAREYKAHQIALDLDEVELLLEAGELLRRGLKQLSGDPLMPIRGAEDLIGRTQ 891

Query: 125 SVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESSIILIEGQS 184
           ++  + L       D++  + PN   + + + + +N   +    I L  ++  +L   Q 
Sbjct: 892 ALLAERL-------DAI-LNAPNTGLRIKRDPQLINKFLAQGMDILL--DAETLLQRWQQ 941

Query: 185 NNSVVEKPENLDSVLNQMHESASALLTILDAL-EYGELKDTVKNIDELSNAMLNETVAIT 243
           +                  +  SALL  L  L E   L D +  +DEL  A+L+   A+ 
Sbjct: 942 HPG--------------ERQELSALLDELTTLGENAHLAD-LHPVDELCEALLDLYGAVE 986

Query: 244 ENSLSV 249
           E+SL+V
Sbjct: 987 ESSLAV 992