Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 723 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

 Score =  326 bits (836), Expect = 3e-93
 Identities = 162/384 (42%), Positives = 257/384 (66%), Gaps = 1/384 (0%)

Query: 535 AENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVGRLNMLAT 594
           AE + ++   TVRV+  +LD++MN+VGE+V+ R    ++ +    + +  AV  L+++  
Sbjct: 329 AEKAPAEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGSNSGDEAMAKAVSNLDVVTA 388

Query: 595 ELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLT 654
           +LQ  VM  RM P+  VF RFPR VRD A++L KEI+ E+ G + +LD+ +++ LA+PL 
Sbjct: 389 DLQSAVMKTRMQPIKKVFGRFPRLVRDLARSLKKEINLELVGEETDLDKNLVEALADPLV 448

Query: 655 HLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRKKAF 714
           HL+RN++DHGIE  +ER   GKP  G + L A ++ D + +II DDGKG+D   +R KA 
Sbjct: 449 HLVRNAVDHGIEMPEEREAAGKPRTGRVVLSAEQEGDHILLIISDDGKGMDANVLRAKAV 508

Query: 715 EKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVN 774
           EKG+  K+ A++L+D E  N+IF PGFST   +SDVSGRGVGMDVV++KI  L G+V V 
Sbjct: 509 EKGMLEKDAADRLSDLECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGTVNVF 568

Query: 775 SEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAII 834
           S  G+G+ + + +PLT+AI+ TL++ L    +A PL +V ++  ++  +   ++GQE +I
Sbjct: 569 STKGQGSRVVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVI 628

Query: 835 YRNHILPVIWLKDALNTSGFSDSD-DLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGI 893
            R+  LP+ +LK  L  S   +   + +VV++      +G ++D+++G++E+V+KPL  +
Sbjct: 629 VRDKALPLFYLKRWLIQSAAEEEQREGHVVILSVGNQSIGFVVDQLVGQEEVVIKPLGKM 688

Query: 894 LKNINGLAGATILGDGRVALILDL 917
           L+   G++GATI GDGR+ALILD+
Sbjct: 689 LQGTPGMSGATITGDGRIALILDV 712



 Score = 75.5 bits (184), Expect = 1e-17
 Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 7/154 (4%)

Query: 2   DDMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEH 61
           D  E+  + F+ EA E L+ L++ +VELE+ P+D   ++N IFR  HT+KG A  L    
Sbjct: 4   DADEEILQDFLVEAGEILELLSEQLVELESSPDDMA-LLNAIFRGFHTVKGGAGFLQLHE 62

Query: 62  ISSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVE 121
           +    H  E++ D +R G+ +V+ E++D++ + LD++  M  +V +  + T    + L  
Sbjct: 63  LVECCHIAENVFDILRKGERRVDSELMDVVLQALDSVNEMFGQVRERVEPTPASRELLAA 122

Query: 122 VIKSVKEKYLSGENSKEDSLDYSDPNEVAKKQVE 155
           + +      L+   S ++     +P  VA+ QVE
Sbjct: 123 LAR------LAEPASADEPAVPMEPAPVAEPQVE 150