Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  311 bits (797), Expect = 9e-89
 Identities = 168/396 (42%), Positives = 254/396 (64%), Gaps = 9/396 (2%)

Query: 529 ATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKE-----LH 583
           A+ K+ A  + S +S ++RV+ EK+D L+N+VGE+VI +A   QI  + ++ +     L 
Sbjct: 285 ASQKQSAAAAKSGESSSIRVSTEKIDMLINMVGELVITQAMLGQIGQQDEINQESLLLLQ 344

Query: 584 NAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDR 643
             + +L     +LQE VM +RM+P++F FNRFPR VRD  + L K+++  ++G D ELD+
Sbjct: 345 QGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELILKGEDTELDK 404

Query: 644 TVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKG 703
           TVL+++ +P+ HL+RNSLDHG+E  + R+  GK E G + L A  Q   + I I DDG G
Sbjct: 405 TVLEKIVDPMVHLVRNSLDHGLESPEARLAQGKSETGTIMLNAYHQGGCIIIEIADDGAG 464

Query: 704 IDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSK 763
           ++   + +KA +KGL   E  E+L++     +IF PGFSTA+ VSD+SGRGVGMDVV+  
Sbjct: 465 LNTHKILEKARQKGLVGAE--EELSEEAIHQLIFRPGFSTADAVSDLSGRGVGMDVVKRN 522

Query: 764 IESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQ 823
           I  L GS+ + SE GKG+  T+ LPLT+AI+   LIR+ +HIY +PL S+ + + V   +
Sbjct: 523 IHELNGSIELKSEAGKGSRFTIRLPLTLAILDGQLIRIGKHIYVVPLVSIYESLQVPTNR 582

Query: 824 IKNL-EGQEAIIYRNHILPVIWLKDALN-TSGFSDSDDLYVVVVEKNKGKVGMILDEVIG 881
           I  L +G E I  R+  LPVI +    N  +   +  D  V+VV+ N  K G+++DE++ 
Sbjct: 583 INRLSDGHELIRLRDEYLPVIKMYREFNHDADAREIKDGLVMVVDHNNEKAGLLVDELLA 642

Query: 882 RDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917
           + ++V+K L      I G++GATILGDG VALI+D+
Sbjct: 643 QQQVVIKSLEENYTRIPGISGATILGDGTVALIIDV 678



 Score = 75.9 bits (185), Expect = 8e-18
 Identities = 37/99 (37%), Positives = 62/99 (62%), Gaps = 1/99 (1%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           D+ Q+ ++F  E+ E L  +   +++L+    D E I N IFR+AH++KG + T GF  +
Sbjct: 4   DLSQFSQVFFEESIEGLAIMESELLKLDVAAPDPETI-NTIFRAAHSIKGGSATFGFMQV 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETM 101
           ++ TH +E +LD IRDG+ ++ P+ VD+L   +D L  M
Sbjct: 63  ANYTHLLETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGM 101