Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 759 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  316 bits (809), Expect = 4e-90
 Identities = 154/377 (40%), Positives = 257/377 (68%), Gaps = 4/377 (1%)

Query: 545 TVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVGRLNMLATELQEEVMGMR 604
           TVRV+  +LD++MN+VGE+V+ R     +    + +E+  A+  L+++  +LQ  VM  R
Sbjct: 372 TVRVDTARLDQIMNMVGELVLVRNRLVSLGVTREDEEMSKALANLDLVTADLQGAVMKTR 431

Query: 605 MIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLTHLIRNSLDHG 664
           M P+  VF RFPR VRD A++L+KEID  + G + +LD+ +++ LA+PL HL+RNS+DHG
Sbjct: 432 MQPIKKVFGRFPRVVRDLARSLNKEIDLVLVGEETDLDKNLVEALADPLVHLVRNSVDHG 491

Query: 665 IEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRKKAFEKGLYSKEEA 724
           IE   +R+  GKP+ G + L A+++ D + + I DDG G+DPE ++  A ++G+  ++ A
Sbjct: 492 IEMPADRVASGKPKTGTITLSASQEGDHILLKIEDDGAGMDPEKLKAIAVKRGVLDEDAA 551

Query: 725 EKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNSEVGKGTEIT 784
            +++D+EA N+IF PGFST   +SD+SGRGVGMDVV+++I  L G+V ++S  GKGT + 
Sbjct: 552 ARMSDHEAYNLIFAPGFSTKTEISDISGRGVGMDVVKTRITQLNGTVHIDSVKGKGTILE 611

Query: 785 LHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAIIYRNHILPVIW 844
           + +PLT+AI+ TL++ + + ++ALPL+SV ++  ++  +   ++GQ  +I+R+  +P+ +
Sbjct: 612 IKVPLTLAIMPTLMVEVAKQVFALPLSSVNEIFHLDLTKTNIVDGQLTVIFRDKAVPLFY 671

Query: 845 LKDALNTS----GFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGILKNINGL 900
           L+  L+ S       D    +VV+V+    ++G ++D +IG++E+V+KPL  +L    G+
Sbjct: 672 LEQWLSRSKTKFKHGDKKHGHVVIVQLGTMQIGFVVDALIGQEEVVIKPLGALLHGTPGM 731

Query: 901 AGATILGDGRVALILDL 917
           AGATI  DG +ALILD+
Sbjct: 732 AGATITSDGGIALILDV 748



 Score = 79.3 bits (194), Expect = 8e-19
 Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L + +V LEN PED++ ++N IFR  HT+KG A  LG   +  
Sbjct: 7   EEILQDFLIEAGEILELLQEQLVALENNPEDTD-LLNAIFRGFHTVKGGAGFLGLAPMVD 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
           + H  E+  D +R GK  V  E++D++ + +DA+ TM ++   G+       + L ++  
Sbjct: 66  VCHESENTFDLLRTGKRHVTAELMDIILQAVDAINTMFAQTQAGQAQEPASAELLDKLKL 125

Query: 125 SVKEKYLSGENSKEDSLDYSDP 146
                 L  E  +  S   S+P
Sbjct: 126 LSSGAPLPSEGGEASSSSSSEP 147