Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 746 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  316 bits (809), Expect = 4e-90
 Identities = 161/393 (40%), Positives = 259/393 (65%), Gaps = 11/393 (2%)

Query: 529 ATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVGR 588
           AT+  QAE        TVRV+  +LD++MN+VGE+V+ R     +    D +++  A+  
Sbjct: 349 ATNMPQAET-------TVRVDTARLDQIMNMVGELVLVRNRLLSLGISRDDEDMSKALAN 401

Query: 589 LNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDE 648
           L+++  +LQ  VM  RM P+  VF RFPR VRD A++L+KEID  + G D +LD+ +++ 
Sbjct: 402 LDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLRMIGEDTDLDKNLVEA 461

Query: 649 LAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEA 708
           LA+PL HL+RNS+DHGIE  DER   GK   G + L A+++ D + + I DDG G+DPE 
Sbjct: 462 LADPLVHLVRNSVDHGIEMPDEREANGKSRTGTITLSASQEGDHILLKIEDDGAGMDPEK 521

Query: 709 MRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLG 768
           +++ A ++G+  ++ A +++D EA N+IF PGFST   +SD+SGRGVGMDVV+++I  L 
Sbjct: 522 LKQIAIKRGVLDEDAAARMSDEEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLN 581

Query: 769 GSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLE 828
           G+V ++S  GKGT + + +PLT+AI+ TL++ + + ++ALPL+SV ++  ++  +   ++
Sbjct: 582 GTVHIDSLKGKGTCLEIKVPLTLAIMPTLMVEVAQQVFALPLSSVSEIFHLDLTKTNVVD 641

Query: 829 GQEAIIYRNHILPVIWLKDALNTSGFS----DSDDLYVVVVEKNKGKVGMILDEVIGRDE 884
           GQ  +I R   +P+ +L+  L+    S    D    +VV+V+    ++G ++D +IG++E
Sbjct: 642 GQLTVIVREKAVPLFYLEHWLSRKAVSFKHGDKQHGHVVIVQLGTMQIGFVVDSLIGQEE 701

Query: 885 IVVKPLTGILKNINGLAGATILGDGRVALILDL 917
           +V+KPL  +L    G+AGATI  DG +ALILD+
Sbjct: 702 VVIKPLGTLLHGTPGMAGATITSDGGIALILDV 734



 Score = 75.9 bits (185), Expect = 9e-18
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L++ +V LEN P+D+E ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLIEAGEILELLSEQLVALENNPDDTE-LLNAIFRGFHTVKGGAGFLSLTPMVD 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVD 115
           + H  E+  D +R GK  V+ E++D++ + +D + +M +E   G + +  D
Sbjct: 66  VCHEAENTFDLLRTGKRSVSAELMDIILQAVDTINSMFAETQAGVEQSPAD 116