Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 686 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  293 bits (750), Expect = 3e-83
 Identities = 190/585 (32%), Positives = 314/585 (53%), Gaps = 48/585 (8%)

Query: 375 VLISTDLDNINILDSVCEME-----YVLSTEVKFEHETAVTQVADAEIPETEKSLETPAK 429
           +L+S DL   N+LD+V   +      +   E KF  E +     +++  ET++  ETP +
Sbjct: 91  LLLSVDLLR-NMLDAVMHQQTFDDPMLSDLEQKFAAELSQ---GESQEDETQREPETPEQ 146

Query: 430 --FKINIKLDEECLLKAVRAYMVIKDLKEKGTV--------------------------- 460
             ++I+ K   + L       ++  +L + G +                           
Sbjct: 147 TTWQISFKAGTDILRYGNDPLLMFNELGQCGELSVELLPQEIPDFTQYDPEACYLAWSLT 206

Query: 461 LETEPPEEKIQEG-TLGGNTVTIYYDSDESEDDIKEIISKTPEITEFLVNVQKDTNNLKD 519
           L T+ P  +++E      +   I Y +     +  EI ++         ++Q  T     
Sbjct: 207 LTTDQPLSRLKEAFEWVEDECDIDYQAQPKASEASEITTEKEIEATAESDIQASTQTTTP 266

Query: 520 NTKIKNTVDATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDL 579
            +       + ++    +S ++ + ++RV+IEK+D L+N+VGE+VI +A   QI  + ++
Sbjct: 267 ASVQPEKPASQTRPSVVSSKTQDAGSIRVSIEKIDLLINMVGELVITQAMLGQIGQQEEM 326

Query: 580 KE-----LHNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEI 634
                  +   + +L     +LQE VM +RM+P++F FNRFPR VRD  + L K+++  +
Sbjct: 327 TPESFITMKQGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELIL 386

Query: 635 EGSDIELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVN 694
           +G D ELD+TV++++ +P+ HL+RNSLDHG+E  + R + GKPE G L L A  Q   + 
Sbjct: 387 KGEDTELDKTVMEKIVDPMVHLVRNSLDHGLETPEVRRQKGKPETGTLTLNAFHQGGNII 446

Query: 695 IIIRDDGKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRG 754
           I I DDG G++ + +  KA  KGL   +  E+L++     +IF PGFSTAE VSD+SGRG
Sbjct: 447 IEIIDDGAGLNTQKILDKARAKGLVGSD--EELSEEAIHQLIFKPGFSTAETVSDLSGRG 504

Query: 755 VGMDVVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVL 814
           VGMDVV   I  L G++ + S   KG+  T+ LPLT+AI+   L+R+  H Y +PL ++ 
Sbjct: 505 VGMDVVLRNIHELNGTIELKSTQDKGSRFTIRLPLTLAILDGQLVRIGTHTYVVPLVAIH 564

Query: 815 DVISVEKEQIKNL-EGQEAIIYRNHILPVIWLKDAL-NTSGFSDSDDLYVVVVEKNKGKV 872
           + + V    I  L E  E I  R+  LPV+ + +A  + +      D  V+VV+ N  KV
Sbjct: 565 ESLEVPAAHINRLSEEHEVIRLRDEYLPVLKVYEAFHHEADAKQIKDGLVMVVDANNDKV 624

Query: 873 GMILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917
           G+++DE++ + ++V+K L      + G++GATILGDG VALI+D+
Sbjct: 625 GLLVDELLSQQQVVIKSLEDNYSKVAGISGATILGDGTVALIIDI 669



 Score = 77.4 bits (189), Expect = 3e-18
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           D+ Q+ ++F  E+ E L+S+   +++L+    D E I N IFR+AH++KG + T GF  +
Sbjct: 4   DLSQFSQVFFEESLEGLESMESELLKLDIAAPDPEAI-NTIFRAAHSIKGGSGTFGFNQV 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEV 122
           ++ TH +E +LD IRDG+ ++     D+L   +D L  M+  V   +   + D   L ++
Sbjct: 63  ANYTHLLETLLDEIRDGRREMTSHHQDILLLSVDLLRNMLDAVMHQQ---TFDDPMLSDL 119

Query: 123 IKSVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNI 162
            +    +   GE+ ++++    +  E    Q+  K   +I
Sbjct: 120 EQKFAAELSQGESQEDETQREPETPEQTTWQISFKAGTDI 159



 Score = 26.2 bits (56), Expect = 0.007
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 152 KQVEEKTVNNISSNSGSIHLVNESSIILIEGQSNNSVVEKPENLDSVLNQMHESASALLT 211
           K V EK V+ +      +HLV  S    +E         KPE     LN  H+  + ++ 
Sbjct: 395 KTVMEKIVDPM------VHLVRNSLDHGLETPEVRRQKGKPETGTLTLNAFHQGGNIIIE 448

Query: 212 ILD---------ALEYGELKDTVKNIDELSNAMLNETV 240
           I+D          L+    K  V + +ELS   +++ +
Sbjct: 449 IIDDGAGLNTQKILDKARAKGLVGSDEELSEEAIHQLI 486