Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 758 a.a., chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  322 bits (825), Expect = 6e-92
 Identities = 166/408 (40%), Positives = 268/408 (65%), Gaps = 7/408 (1%)

Query: 517 LKDNTKIKNTVDATSKKQAENSSSKKSQ---TVRVNIEKLDKLMNLVGEVVINRANFTQI 573
           +K   ++     A  K  A  SS+   Q   TVRV+  +LD++MN+VGE+V+ R     +
Sbjct: 339 VKPKAEVVVAEKAPVKAAAAASSTSVPQGETTVRVDTARLDQIMNMVGELVLVRNRLVSL 398

Query: 574 ATKYDLKELHNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFE 633
               D +E+  A+  L+++  +LQ  VM  RM P+  VF RFPR VRD A+ L+KEID  
Sbjct: 399 GISRDDEEMSKALANLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLV 458

Query: 634 IEGSDIELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRV 693
           + G + +LD+ +++ LA+PL HL+RNS+DHGIE  ++R   GKP  G++ L A+++ D +
Sbjct: 459 LVGEETDLDKNLVEALADPLVHLVRNSVDHGIEMPNDREASGKPRTGVITLSASQEGDHI 518

Query: 694 NIIIRDDGKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGR 753
            + I DDG G+DPE +++ A ++G+  ++ A ++TDNEA N+IF PGFST   +SD+SGR
Sbjct: 519 LLKIEDDGAGMDPEKLKQIAIKRGVLDEDSAARMTDNEAYNLIFAPGFSTKVEISDISGR 578

Query: 754 GVGMDVVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSV 813
           GVGMDVV+++I  L G+V ++S  GKGT + + +PLT+AI+ TL++ + + ++ALPL+SV
Sbjct: 579 GVGMDVVKTRITQLNGTVHIDSMKGKGTILEIKVPLTLAIMPTLMVDVAKQVFALPLSSV 638

Query: 814 LDVISVEKEQIKNLEGQEAIIYRNHILPVIWLKDAL--NTSGFSDSDDL--YVVVVEKNK 869
            ++  ++  +   ++GQ  +I RN  +P+ +L+  L  N + F   D    +VV+V+   
Sbjct: 639 NEIFHLDLTKTNIVDGQLTVIVRNKAVPLFYLEHWLHRNKTNFKHGDKKHGHVVIVQLGI 698

Query: 870 GKVGMILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917
            ++G ++D +IG++E+V+KPL  +L    G+AGATI  DG +ALILD+
Sbjct: 699 MQIGFVVDALIGQEEVVIKPLGALLHGTPGMAGATITSDGGIALILDV 746



 Score = 84.3 bits (207), Expect = 3e-20
 Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L + +V LEN P+D++ ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLIEAGEILELLQEQLVALENNPDDTD-LLNAIFRGFHTVKGGAGFLSLTPMVD 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEV-I 123
           + H  E+  D +R GK  V  E++D++ + +DA+ TM ++   GE     D   L ++ +
Sbjct: 66  VCHEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALLAKLKL 125

Query: 124 KSVKEKYLS--GENSKEDSLDYSDPNEVAK-----KQVEEKTVNNISSNSGSIHLVNES 175
            S  E   S  G+ + E  L   +P  V +       VEE  V  + S S SI  +N++
Sbjct: 126 LSSGEPLPSELGQRAPEPEL-IPEPEPVIETIVEVAVVEEMPVETVDSASSSIDEINDA 183