Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 1089 a.a., chemotaxis protein CheA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  344 bits (883), Expect = 2e-98
 Identities = 174/392 (44%), Positives = 265/392 (67%), Gaps = 11/392 (2%)

Query: 540  SKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYD-----------LKELHNAVGR 588
            SK S T+RV+ EKLD LMNL+GE++INR  ++ +A   +            + L      
Sbjct: 689  SKASSTIRVDHEKLDHLMNLIGELIINRNRYSMLARHLEEGGASVNVAEVAQNLSETTYA 748

Query: 589  LNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDE 648
            +  ++ +LQ+ +M +RM+PV+ VF+RFPR VRD ++   KE+D  +EG + ELD++V++ 
Sbjct: 749  MARISDDLQDTIMKVRMVPVSSVFSRFPRLVRDLSRKSGKEVDLVLEGEETELDKSVVEV 808

Query: 649  LAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEA 708
            + +PL HLIRNS+DHG+E  +ERI  GK  KG++ L A  + + V I I DDGKGIDPE 
Sbjct: 809  IGDPLVHLIRNSVDHGVEPEEERIAKGKKPKGVVTLRAFHKGNSVAIEIEDDGKGIDPEK 868

Query: 709  MRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLG 768
            MR+ A  KG+ + EEA+ + D EA+ +IF PGFS+AE ++D+SGRGVGMDVVR+ I++L 
Sbjct: 869  MREVAVRKGIVTPEEAKAMDDREAMELIFAPGFSSAEKITDISGRGVGMDVVRTNIKNLK 928

Query: 769  GSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLE 828
            GSV+++SEVGKGT  TL LPLT+AII  L++ +   +YA+PL +V +   +E  ++ +++
Sbjct: 929  GSVSIHSEVGKGTRFTLSLPLTLAIIDALMVNVAGQMYAIPLDAVSETTKIEARRLTDVK 988

Query: 829  GQEAIIYRNHILPVIWLKDALNTSGFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVK 888
            G++A+  R  +L ++ L + L        D L VVV+  N  ++G+++D ++ R EIV+K
Sbjct: 989  GRKAVTLRGEVLGIVDLSELLALPRSDAQDVLSVVVIHDNDRRLGLVVDRLLERQEIVIK 1048

Query: 889  PLTGILKNINGLAGATILGDGRVALILDLNNI 920
            PL   L ++ G++GATI+GDG V LILD + I
Sbjct: 1049 PLGAYLGDLKGISGATIMGDGSVILILDPHEI 1080



 Score = 86.7 bits (213), Expect = 8e-21
 Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 11  FMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHHME 70
           F+ EA+EHL+++  N++ELE  P D+  ++N IFR  H+LKG++  LG   ++ L H  E
Sbjct: 14  FIVEAKEHLETIEPNLLELEKAP-DNLALLNEIFRPMHSLKGASGFLGLNRMNQLAHRAE 72

Query: 71  DILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIKSV 126
           +ILD +R G + V  EI+D++    DAL  M+  +        V ++SL+  I ++
Sbjct: 73  NILDELRKGAMVVTSEIMDVILAVTDALRQMIDNLESSGQEGDVAIESLITTIDAI 128



 Score = 76.6 bits (187), Expect = 8e-18
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E + + F+ EA E  + L   ++ELE  P++ +  +N +FR  H LKG++  +GF  ++ 
Sbjct: 243 EAHLKDFIDEAREMTEQLGTGLLELERHPDEKDDRVNDLFRFFHNLKGNSGIIGFRELNG 302

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
           LTH  E +L+ IR G+++ + E+VDLL   +D ++ +V+ +     +  V    + EV++
Sbjct: 303 LTHEAETLLNNIRRGEMQSSAELVDLLLFVVDVIDALVNRIETA--SGMVHGFDISEVLE 360

Query: 125 SVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESS 176
            +++    GE      +      + A +   E T     S  G     +ES+
Sbjct: 361 PLQQAVAGGEARLPVGI-VGMAKQAASQPAAESTATTEGSMQGGADSADESA 411