Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 762 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

 Score =  319 bits (818), Expect = 4e-91
 Identities = 161/404 (39%), Positives = 264/404 (65%), Gaps = 4/404 (0%)

Query: 518 KDNTKIKNTVDATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKY 577
           K +  +     A +   A  +  +   TVRV+  +LD++MN+VGE+V+ R     +    
Sbjct: 347 KTDVAVAEKAPAKAAAAASANVPQGETTVRVDTARLDQIMNMVGELVLVRNRLLSLGISR 406

Query: 578 DLKELHNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGS 637
           D +E+  A+  L+++  +LQ  VM  RM P+  VF RFPR VRD A+ L+KEID  + G 
Sbjct: 407 DDEEMSKALANLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGE 466

Query: 638 DIELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIII 697
           + +LD+ +++ LA+PL HL+RNS+DHGIE  ++R   GKP  G + L A+++ D + + I
Sbjct: 467 ETDLDKNLVEALADPLVHLVRNSVDHGIEMPNDREASGKPRTGTITLSASQEGDHILLKI 526

Query: 698 RDDGKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGM 757
            DDG G+DPE +++ A ++G+  ++ A ++TD+EA N+IF PGFST   +SD+SGRGVGM
Sbjct: 527 EDDGAGMDPEKLKQIAIKRGVLDEDTAARMTDSEAYNLIFAPGFSTKVEISDISGRGVGM 586

Query: 758 DVVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVI 817
           DVV+++I  L G+V ++S  GKGT + + +PLT+AI+ TL++ + + ++ALPL+SV ++ 
Sbjct: 587 DVVKTRITQLNGTVHIDSMKGKGTVLEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIF 646

Query: 818 SVEKEQIKNLEGQEAIIYRNHILPVIWLKDAL--NTSGFSDSDDL--YVVVVEKNKGKVG 873
            ++  +   ++GQ  +I RN  +P+ +L+  L  N + F   D    +VV+V+    ++G
Sbjct: 647 HLDLTKTNIVDGQLTVIVRNKAVPLFYLEQWLHRNRTNFKHGDKKHGHVVIVQLGMMQIG 706

Query: 874 MILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917
            ++D +IG++E+V+KPL  +L    G+AGATI  DG +ALILD+
Sbjct: 707 FVVDALIGQEEVVIKPLGALLHGTPGMAGATITSDGGIALILDV 750



 Score = 77.4 bits (189), Expect = 3e-18
 Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L + +V LEN P+D+  ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLIEAGEILELLQEQLVALENNPDDTN-LLNAIFRGFHTVKGGAGFLSLTPMVD 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVD 115
           + H  E+  D +R GK  V+ E++D++ + +DA+ TM ++   GE     D
Sbjct: 66  VCHEAENTFDLLRTGKRSVSAELMDIILQAVDAINTMFAQTQQGEQQDPAD 116