Pairwise Alignments

Query, 147 a.a., chemotaxis protein CheW from Methanococcus maripaludis S2

Subject, 159 a.a., Chemotaxis signal transduction protein from Pseudomonas stutzeri RCH2

 Score = 90.9 bits (224), Expect = 8e-24
 Identities = 44/146 (30%), Positives = 86/146 (58%), Gaps = 3/146 (2%)

Query: 2   DDVPKVVVFKLASNEYCLRVTGVREVLKLQDITSIPNTPDYIVGVTNIRGEIMPIIDLRR 61
           D V + V F+L +  Y + V  V+EVL+  +I  +P  P Y++G+ N+RG ++ +ID R+
Sbjct: 11  DPVLQWVTFRLDNETYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQ 70

Query: 62  KLNLFEDLGDESIDEKLVMVVEIDGVPIGILVDSVSDVMQISAEQIEDIEGIKKNASGEY 121
           +  L  D    S D   ++++E D   IGI+VDSV++V+ +   +IE    +  + S ++
Sbjct: 71  RFGL--DTAPVS-DNTRIVIIEADRQVIGIMVDSVAEVVYLRQSEIETAPNVGNDESAKF 127

Query: 122 IEGIAKIGNRLIIILDIKNLIDPQEF 147
           I+G+      L+I++++  ++  +E+
Sbjct: 128 IQGVCNKNGELLILVELDKMMSEEEW 153



 Score = 26.6 bits (57), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 1   MDDVPKVVVFKLASNEYCLRVTGVREVLKLQ--DITSIPNTPD-----YIVGVTNIRGEI 53
           + D  ++V+ +       + V  V EV+ L+  +I + PN  +     +I GV N  GE+
Sbjct: 79  VSDNTRIVIIEADRQVIGIMVDSVAEVVYLRQSEIETAPNVGNDESAKFIQGVCNKNGEL 138

Query: 54  MPIIDLRRKLNLFEDLGDESI 74
           + +++L + ++  E    ESI
Sbjct: 139 LILVELDKMMSEEEWAELESI 159