Pairwise Alignments

Query, 147 a.a., chemotaxis protein CheW from Methanococcus maripaludis S2

Subject, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

 Score = 82.0 bits (201), Expect = 1e-20
 Identities = 43/142 (30%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 6   KVVVFKLASNEYCLRVTGVREVLKL-QDITSIPNTPDYIVGVTNIRGEIMPIIDLRRKLN 64
           ++V+FKL   E+ + +  V+E++++ ++I+ +P T D+I GV N+RG ++PI+D+R++ +
Sbjct: 370 QLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRFH 429

Query: 65  LFEDLGDESIDEKLVMVVEIDGVPIGILVDSVSDVMQISAEQIEDIEGIKKNASGEYIEG 124
           L E    E    + ++VV  + +  G +VDSVS+V++I   Q+ED   +      + +  
Sbjct: 430 LPEMARHE---RQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAP-VLSEEQAQLMRQ 485

Query: 125 IAKIGNRLIIILDIKNLIDPQE 146
           +  +  R+I +L    LI   E
Sbjct: 486 MVNLSPRMIGVLSADQLISNTE 507



 Score = 62.8 bits (151), Expect = 8e-15
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 2   DDVPKVVVFKLASNEYCLRVTGVREVLKLQDITSIPNTPDYIVGVTNIRGEIMPIIDLRR 61
           +++ + V F L    + L +  V E+++L    S+P TP Y++G++N+RG+I+P++ LR 
Sbjct: 15  ENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRT 74

Query: 62  KLNLFEDLGDESIDEKLVMVVEIDGVPIGILVDSVSDVMQISAEQIEDIEGIKKNASGEY 121
            L +      E+     V+V+ I    IG  VD V +V     E I+             
Sbjct: 75  LLCMDRTSATEA---TRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTL 131

Query: 122 IEGIAKIGNRLIIILDIKNLID 143
           I       N++I +L+   L+D
Sbjct: 132 ITNTIHSDNQIIQVLNCHRLLD 153



 Score = 62.0 bits (149), Expect = 1e-14
 Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 12/153 (7%)

Query: 2   DDVPKVVVFKLASNEYCLRVTGVREVLKLQDI-TSIPNTPDYIVGVTNIRGEIMPIIDLR 60
           +D+ ++V   +   EY   +   +E++++ +I T +P T   I+GV N+RG+ +P++ LR
Sbjct: 188 EDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLR 247

Query: 61  RKLNLFEDLGDESIDEKLVMVVEI-----DGVPIGILVDSVSDVMQISAEQIEDI-EGIK 114
               LF        D   V+VV I     + +P+G++VD+V +V+++  + ++ + E + 
Sbjct: 248 ---TLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMS 304

Query: 115 KNASGEYIEGIAKI--GNRLIIILDIKNLIDPQ 145
           K      I  I  +  G R + ++ ++ L D Q
Sbjct: 305 KMGQANDISAICNLDDGRRTLSVISVEQLFDAQ 337