Pairwise Alignments

Query, 147 a.a., chemotaxis protein CheW from Methanococcus maripaludis S2

Subject, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 93.6 bits (231), Expect = 4e-24
 Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 13/151 (8%)

Query: 2   DDVPKVVVFKLASNEYCLRVTGVREVLKL-QDITSIPNTPDYIVGVTNIRGEIMPIIDLR 60
           DD  + V F+L + EY + +  V+E++++ +++T +P TPD+I GV N+RG ++P++D R
Sbjct: 381 DDEEQFVAFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVDQR 440

Query: 61  RKLNLFEDLGDESIDEKLVMVVEIDGVPIGILVDSVSDVMQISAEQIEDIEGIKKNASGE 120
           R+  L    G E  D + +MV  I GV  G +VDSVS+V++I A  I    G     S E
Sbjct: 441 RRFGL---PGMERNDRQRIMVYTIRGVRTGFIVDSVSEVIRIPASLI----GPAPVLSDE 493

Query: 121 YIEGIAKIGN-----RLIIILDIKNLIDPQE 146
               I ++ N     R+I++LD++ L+D +E
Sbjct: 494 QQRLIRRVANIEKQKRMILLLDVEQLLDGKE 524



 Score = 67.8 bits (164), Expect = 2e-16
 Identities = 45/154 (29%), Positives = 86/154 (55%), Gaps = 11/154 (7%)

Query: 2   DDVPKVVVFKLASNEYCLRVTGVREVLKLQD-ITSIPNTPDYIVGVTNIRGEIMPIIDLR 60
           DD  ++V F++A  EY L +  V+E++++   IT +PNTP +++GV  +R  ++P++ LR
Sbjct: 202 DDESQLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRNRLLPLVGLR 261

Query: 61  RKLNLFEDLGDESIDEKLVMVVE----IDGVPIGILVDSVSDVMQISAEQIEDIEGI--K 114
               L   L     ++ +V+ +E      G  +G+++DSV +V+++    I+ +  +  +
Sbjct: 262 EMFGL-PTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGHALIDPMPALLAR 320

Query: 115 KNASGEYIEGIAKI--GNRLIIILDIKNLIDPQE 146
               GE IE I ++  GNRL+ IL    + +  E
Sbjct: 321 TGNLGE-IEAICRLQGGNRLVSILSADAMFNSDE 353



 Score = 66.6 bits (161), Expect = 5e-16
 Identities = 36/137 (26%), Positives = 80/137 (58%), Gaps = 6/137 (4%)

Query: 8   VVFKLASNEYCLRVTGVREVLKLQDITSIPNTPDYIVGVTNIRGEIMPIIDLRRKLNLFE 67
           V+F + ++ + + ++ V+E++++ D+  +P +P  + G+ N+RG ++P+I LR    +  
Sbjct: 36  VIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHVFGMAP 95

Query: 68  DLGDESIDEKLVMVVEIDGVPIGILVDSVSDVMQISAEQIEDIEGIKKNASGEYIEGIAK 127
            + D++      +VV   G P+G++VD V++V+ + A+ IE    I      + + G+ K
Sbjct: 96  VVHDDATR----VVVLDQGRPVGLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGMIK 151

Query: 128 -IGNR-LIIILDIKNLI 142
             G+R +++ILD   ++
Sbjct: 152 GDGDRAMVMILDAAKVV 168