Pairwise Alignments

Query, 147 a.a., chemotaxis protein CheW from Methanococcus maripaludis S2

Subject, 299 a.a., chemotaxis protein CheV (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 56.2 bits (134), Expect = 4e-13
 Identities = 31/138 (22%), Positives = 75/138 (54%), Gaps = 6/138 (4%)

Query: 7   VVVFKLASNE-YCLRVTGVREVLKLQDITSIPNTPDYIVGVTNIRGEIMPIIDLRRKLNL 65
           +++F+L+ ++ + L    +RE++    ++ IP +   I+G   IRG  +P++D+   +  
Sbjct: 11  LLLFRLSQHQIFALGTLKIRELVPYTPLSKIPQSHPTILGAATIRGHTIPVVDMAAAIG- 69

Query: 66  FEDLGDESIDEKLVMVVEIDGVPIGILVDSVSDVMQISAEQIE-DIEGIKKNASGEYIEG 124
           +  + DE      +++ +   + IG LV ++  +++ +   IE     + KNA   ++ G
Sbjct: 70  YRPVSDEERQHCYIIITDCQRMIIGFLVRAIDKIIECNWRDIEAPSANLGKNA---FLTG 126

Query: 125 IAKIGNRLIIILDIKNLI 142
           + +  N+L+ +LD++ L+
Sbjct: 127 VTRYDNQLVQLLDVELLL 144