Pairwise Alignments

Query, 147 a.a., chemotaxis protein CheW from Methanococcus maripaludis S2

Subject, 170 a.a., purine-binding chemotaxis protein CheW (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.2 bits (217), Expect = 6e-23
 Identities = 47/145 (32%), Positives = 85/145 (58%), Gaps = 5/145 (3%)

Query: 3   DVPKVVVFKLASNEYCLRVTGVREVLKLQDITSIPNTPDYIVGVTNIRGEIMPIIDLRRK 62
           D  + + F L    Y L +  V+E+   + +T I N P +I GV N+RG+I+PI+DLR K
Sbjct: 17  DEVEFLSFVLGEEHYALDIMSVKEIRGYEPVTKIANAPSFIKGVLNLRGDIVPIVDLRMK 76

Query: 63  LNLFEDLGDESIDE-KLVMVVEIDGVPIGILVDSVSDVMQISAEQIEDIEGIKKNASGEY 121
            N    +G  + DE  +V+++ +    +GI+VD+VSDV+++S+E I             Y
Sbjct: 77  FN----VGTVTYDEFTIVIMLNVCDRIVGIVVDAVSDVIKLSSEAILPAPEFGAAFDSRY 132

Query: 122 IEGIAKIGNRLIIILDIKNLIDPQE 146
           ++G+A +  +++I+++I+ LI   +
Sbjct: 133 LKGLATVDEKMVILVNIQALISSDD 157