Pairwise Alignments

Query, 255 a.a., dihydroorotate dehydrogenase electron transfer subunit from Methanococcus maripaludis S2

Subject, 405 a.a., Na(+)-translocating NADH-quinone reductase subunit F (RefSeq) from Shewanella loihica PV-4

 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 62  GKFTEKIHSLKKGDLLGIRGPYGNNF-ECIGTKILAVAGGIGSAPVISAVEAFSKLGVE- 119
           GK +  I +LK GD + I GP+G  F +    +++ + GG G AP+ S +  F++L  E 
Sbjct: 240 GKMSSYIFNLKAGDKVTISGPFGEFFVKETDAEMVFIGGGAGMAPMRSHI--FNQLKGEQ 297

Query: 120 ----ITSVIGGRTKDELLFLDRFEKCGK-----------TFACTDDCSFGFGGFTTEKML 164
               +T   G R++ E+ + + F+               +    +D   G+ GF    + 
Sbjct: 298 TKRKMTFWYGARSRREIFYQEEFDALAAENDNFEWHVALSDPLPEDNWDGYTGFIHNVLY 357

Query: 165 ELLLEE-------KFDMVITCGPEIMMKKVVEIAE 192
           E  L+        +F M   CGP IM   V+ + E
Sbjct: 358 ENYLKNHKAPEDCEFYM---CGPPIMNSSVINMLE 389