Pairwise Alignments

Query, 255 a.a., dihydroorotate dehydrogenase electron transfer subunit from Methanococcus maripaludis S2

Subject, 295 a.a., hydrogenase, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  105 bits (262), Expect = 1e-27
 Identities = 83/267 (31%), Positives = 129/267 (48%), Gaps = 36/267 (13%)

Query: 4   PVMCKIIDVIDESPTVKTFLLD-------NEFDFKPGQFAMVWIPEIDEKPFGFSSKNS- 55
           P +  +++ + E+P +KT  +        + F F PGQ   + +  + E  F  +S  + 
Sbjct: 27  PDVATVLETVQETPAIKTLRVRIDDAARMDAFRFNPGQVGQLSLFGVGESTFVINSPPTR 86

Query: 56  -----ISIAKVGKFTEKIHSLKKGDLLGIRGPYGNNF---ECIGTKILAVAGGIGSAPV- 106
                 SI + G+ T  +H LK GD +G+R P GN F   +  G  I+ V GGIG AP+ 
Sbjct: 87  MDYLQFSIMRAGEVTAALHGLKPGDKVGVRAPLGNWFPFEDMRGKDIVFVGGGIGMAPLR 146

Query: 107 ---ISAVEAFSKLGVEITSVIGGRTKDELLFLDRFEK-CGKTFACT--------DDCSFG 154
              +  ++  +  G  IT + G RT  ++ F D  +   G++   T        DD    
Sbjct: 147 TLLLYMLDNRADYG-NITLLYGARTPGDMAFRDDVQDWLGRSDMNTTLTVDQAPDDWPHR 205

Query: 155 FGGFTTEKMLELLLEEKFDMVITCGPEIMMKKVVEIAEQNNIP---IQVSLERYMKCGIG 211
             G     +L+L       + + CGP IM+K  VE  ++ +     I  +LER MKCGIG
Sbjct: 206 -AGLIPHVLLDLAPSNANSVAVLCGPPIMIKFTVEALKKLHFADEQIITTLERRMKCGIG 264

Query: 212 ICGQCAVDDEGLCVCKDGPVFWSDKLK 238
           ICG+C +  + +CV  DGPVF   +LK
Sbjct: 265 ICGRCNIGTKYVCV--DGPVFSYAELK 289