Pairwise Alignments

Query, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis S2

Subject, 275 a.a., diaminopimelate epimerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  219 bits (558), Expect = 5e-62
 Identities = 115/279 (41%), Positives = 169/279 (60%), Gaps = 11/279 (3%)

Query: 3   FTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILP--SDVADFKMRM 60
           FTKMHGLGND++ VD ++Q +    E  + ++DR+FGIG D L+L+ P      DF  R+
Sbjct: 4   FTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRI 63

Query: 61  FNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDM 120
           FN+DGSE E CGN  RC  +FV +K +T K  I + T AG   L +  + G    V V+M
Sbjct: 64  FNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGG----VTVNM 119

Query: 121 GEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTC--VSMGNPHAITYIENVDEFPLEKI 178
           G PIL   +IP  ++K    ++    +     F C  VSMGNPH +  ++++ + P+  +
Sbjct: 120 GVPILDPAQIPFKAKK---FEKTYLLQSAQQTFLCGAVSMGNPHVVLEVDDITQAPVADV 176

Query: 179 GPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVG 238
           G     HE+FP+  NV F++++  + +K+RV+ERGA ETLACG+GACA      L+G +G
Sbjct: 177 GAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGKLG 236

Query: 239 RKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277
            +  V L GG LTI W    K ++MTGPA  V++G+I +
Sbjct: 237 SRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275