Pairwise Alignments

Query, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis S2

Subject, 279 a.a., diaminopimelate epimerase (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (563), Expect = 1e-62
 Identities = 117/278 (42%), Positives = 171/278 (61%), Gaps = 9/278 (3%)

Query: 3   FTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILP--SDVADFKMRM 60
           FTKMHGLGND++ VD ++Q +    E  K ++DR+FGIG D L+L+ P      DF  R+
Sbjct: 4   FTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRI 63

Query: 61  FNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDM 120
           FN+DGSE E CGN  RC  +FV  K + +K  I + T +G    +MT+   +   V V+M
Sbjct: 64  FNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSG----KMTLRLERDGSVTVNM 119

Query: 121 GEPILKAEEIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIENVDEFPLEK 177
           G P+L+   IP     +EK  ++  ++      +    VSMGNPH +  +++V    +E+
Sbjct: 120 GIPVLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVDDVANADVER 179

Query: 178 IGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYV 237
           IG L   HE+FP+  NV F++++D N +K+RV+ERGA ETLACG+GACA +    L+G +
Sbjct: 180 IGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGKL 239

Query: 238 GRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEI 275
            R+  V L GG LTI W    K ++MTGPA  V++G+I
Sbjct: 240 ARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277