Pairwise Alignments

Query, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis S2

Subject, 275 a.a., diaminopimelate epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (551), Expect = 3e-61
 Identities = 115/281 (40%), Positives = 174/281 (61%), Gaps = 11/281 (3%)

Query: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILP--SDVADFKM 58
           ++FTKMHGLGND++ VD I+Q +    E  + ++DR+FG+G D L+L+ P      DF  
Sbjct: 2   IQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHY 61

Query: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118
           R+FN+DG E E CGN  RC  +FV +K +T+K+ I + T AG    +MT+   +   V V
Sbjct: 62  RIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAG----KMTLRLERDGTVTV 117

Query: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTC--VSMGNPHAITYIENVDEFPLE 176
           +MG P+L+  +IP  ++K    ++    +     F C   SMGNPH +  +E+V    + 
Sbjct: 118 NMGVPVLEPSQIPFKAKK---AEKTYLLQTPQQTFLCGAASMGNPHCVLDVEDVANANVA 174

Query: 177 KIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGY 236
           +IG L   HE+FPR  NV F+++++   +K+RV+ERGA ETLACGTGACA +    ++G 
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 237 VGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277
           + ++  V L GG LTI W    K ++MTGPA  V++G+I +
Sbjct: 235 LDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275