Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 326 a.a., ribonuclease Z from Synechocystis sp000284455 PCC 6803

 Score =  158 bits (399), Expect = 2e-43
 Identities = 105/298 (35%), Positives = 158/298 (53%), Gaps = 10/298 (3%)

Query: 1   MKITFLGTGAAIPTKYRAHPSISLKFD--GEIFLFDCGENTQRQIIFTDVSPMKINNIFI 58
           M+ITFLGT + +PT+ R   SI+L+     E++LFDCGE TQ Q + ++V   ++  IFI
Sbjct: 1   MEITFLGTSSGVPTRNRNVSSIALRLPQRAELWLFDCGEGTQHQFLRSEVKISQLTRIFI 60

Query: 59  THLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAETVKMIEHILGVGYHSIDYPINVHEIS 118
           THLHGDH+ GL GLL S    G  + + IYGP      +E         +   + VH + 
Sbjct: 61  THLHGDHIFGLMGLLASSGLAGSGQGIEIYGPEGLGDYLEACCRFSSTHLGKRLKVHTV- 119

Query: 119 SKTPERIIFTNNYEVFSYPVVHSVPALAYVFKQVKKP-RMDLEKVKKLGIEIGPDLKRLK 177
            +    I    +++V    + H +PA  Y  ++ ++P R ++E+ + LGI  GP   +LK
Sbjct: 120 -RENGLIYEDKDFQVHCGLLKHRIPAYGYRVEEKQRPGRFNVEQAEALGIPFGPIYGQLK 178

Query: 178 DGFNVEL-NGEIITLNDVTLPPKKGICVGYSGDTIPLKEFAEFLKELKCNTLIHEATFDK 236
            G  V L +G  I   D+  PP+ G    Y  DT+  +E     +E   + L+HEATF  
Sbjct: 179 QGKTVTLEDGRRIRGQDLCEPPEPGRKFVYCTDTVFCEEAIALAQE--ADLLVHEATFAH 236

Query: 237 TMERNAKETLHSTATDALNIAKLSGVSTVLLTHISARY--DNLNAFENEIVEFKAENP 292
              + A + LHST+T A  +A L+ V  +++TH S RY   N    EN + E +A  P
Sbjct: 237 QDAQLAFDRLHSTSTMAAQVALLANVKQLIMTHFSPRYAPGNPLQLENLLAEAQAIFP 294