Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 393 a.a., Ribonuclease Z from Synechococcus elongatus PCC 7942

 Score =  172 bits (436), Expect = 1e-47
 Identities = 108/316 (34%), Positives = 176/316 (55%), Gaps = 19/316 (6%)

Query: 1   MKITFLGTGAAIPTKYRAHPSISLKFD--GEIFLFDCGENTQRQIIFTDVSPMKINNIFI 58
           +++TFLGT + +PT+ R   +++L+     E++LFDCGE TQ Q + +++   ++  IF+
Sbjct: 1   LQVTFLGTSSGVPTRSRNVSAVALRLPQRAEVWLFDCGEGTQHQFLRSELRISQLRRIFV 60

Query: 59  THLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAETVKMIEHILGVGYHS---IDYPINVH 115
           TH+HGDHV GL GLL S+   G  + +++YGP     + +++     HS   I+YP+   
Sbjct: 61  THMHGDHVFGLMGLLASVGLAGNPERIDLYGPK---PLRDYLQACAQHSRTHINYPL--- 114

Query: 116 EISSKTPERIIFTNNYEVFSYPVVHSVPALAYVFKQVKKP-RMDLEKVKKLGIEIGPDLK 174
           +I++  P  I       V   P+ H VPA  Y  ++  +P R D+EK + LGI  GP  K
Sbjct: 115 QIATVQPGVIYEDAEIVVSCAPLHHRVPAFGYRIQERDRPGRFDVEKARSLGIPPGPIYK 174

Query: 175 RLKDGFNVEL-NGEIITLNDVTLPPKKGICVGYSGDTIPLKEFAEFLKELKCNTLIHEAT 233
           +LKDG  V L +G  I    +  P ++G  + Y  DTI  +      ++   + LIHE+T
Sbjct: 175 QLKDGETVTLEDGRQIDGRQLCGPTERGRSMVYCTDTIFCESAIALAQD--ADVLIHEST 232

Query: 234 FDKTMERNAKETLHSTATDALNIAKLSGVSTVLLTHISARY--DNLNAFENEIVEFKAEN 291
           F       A++ LH+TAT A  +AK +GV  ++LTH S RY   N    ++ + E +A  
Sbjct: 233 FSDRDREMAEQRLHATATMAAEVAKQAGVRQLILTHFSPRYAPGNEQTLDDLLAEAQAIF 292

Query: 292 PEIHVLIAEDLMEYSL 307
           P+   ++A+D + Y +
Sbjct: 293 PQ--TMLAKDFLSYDV 306