Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 359 a.a., ribonuclease Z from Marinobacter adhaerens HP15

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 76/296 (25%), Positives = 114/296 (38%), Gaps = 52/296 (17%)

Query: 19  HPSISLKFDGEIFLFDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAF 78
           H S SL FD    L D G    R       S  ++ +IFITH H DH+ G    L+S   
Sbjct: 56  HQSRSLLFD----LGDTGRMPLR-------SAHQVTDIFITHCHADHIGGFMWFLRSRI- 103

Query: 79  QGRKKPLNIYGPAETVK----MIEHILGVGYHSIDYPINVHEI----------------- 117
            G   P  ++GP   ++    MI  IL            VHE                  
Sbjct: 104 -GYFPPCRLFGPPGLMRHIAGMISGILWDRVEDRGPRFVVHECHGDHLKRWEITAGDTAP 162

Query: 118 ----SSKTPERIIFTN-NYEVFSYPVVHSVPALAYVFKQVKKPRMDLEKVKKLGIEIGPD 172
                  TP+ ++    ++++ +  + H  P LA+ ++   K ++  ++++  G++ G  
Sbjct: 163 TPLEDQATPDGVLLREPDFQIRAAMLDHGTPVLAFAWEPFGKLQVRNDQLQAEGLKPGAW 222

Query: 173 LKRLKDGFNVELNGEII------TLNDVTLPPK-----KGICVGYSGDTIPLKEFAEFLK 221
           L  LK     +   E+I      TL    L  K      G  V Y  D     E    + 
Sbjct: 223 LHDLKMAVLRQRPDELISPDTGRTLRAEDLARKLLIQAPGEKVVYGTDFADTPENIRKMT 282

Query: 222 ELK--CNTLIHEATFDKTMERNAKETLHSTATDALNIAKLSGVSTVLLTHISARYD 275
           EL    +TL  EA+F    E  A+ T H T      IA+   V  ++  H S RYD
Sbjct: 283 ELAEGAHTLFCEASFMAADEAQARHTHHLTTRACARIAEAGQVRQLIAFHFSHRYD 338