Pairwise Alignments
Query, 1026 a.a., SBBP repeat-containing protein from Methanococcus maripaludis S2
Subject, 1273 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ
Score = 251 bits (642), Expect = 2e-70
Identities = 260/996 (26%), Positives = 425/996 (42%), Gaps = 151/996 (15%)
Query: 133 VDLDGNSYVTGYMNN----DTTNNRNLVIVKYAPNGTILWNSAFSYNSNDCLGMVIALDD 188
+ + N Y G +N DTT + N + N + + N+N + A+ +
Sbjct: 324 ITANSNHYSAGISSNRYVQDTTISGNTINTNATHNSIDICVNRDLTNTNISENEITAISE 383
Query: 189 SGNAYVTGSAYISFGRSTILTTKYAPNG-TMEWYKLFDGG---SSLGSGCGL---ALDDS 241
+ NAY + STIL N T + Y +F G + SG + A+DDS
Sbjct: 384 AYNAYGIYTFGGKILTSTILENNITANSSTYDAYGIFADGYLQDTTISGNTINTNAVDDS 443
Query: 242 GNAYVTGFR-TGTD--------------YDMVTAKYAPNGTLLWSSTLNQLGNDIGYGLA 286
YV + TD Y + T Y T + + + G+ G+
Sbjct: 444 TGIYVYDYSIVNTDILENAITAISGNKAYGVYTENYHIQDTTISGNNITITGDTNARGI- 502
Query: 287 LDDSGNAYVTGYVTNGTENMITLKYAPNGTILWNNTIDYGSDRDYG----------FDVV 336
Y + Y T + T+ N + + D+ ++ YG F +
Sbjct: 503 -------YSSYYFTGSIISNNTIDVTGNNSYILGFNSDFNNNEIYGNILSSLGSQAFGIY 555
Query: 337 L--DNGGNAYFTGYVTDESRGQNIIAMKYAPNG--TNLWNST------------YCPGIN 380
L D+G ++ +T G I + Y +G +N++ + +C G+
Sbjct: 556 LSGDSGNYEFYDNNITVAGEGSEAIKLSYWLSGPNSNIYRNNITSEQSYAIDIIHCQGVR 615
Query: 381 SWGNAIE--VDNSGNAYVTGSMSGYAIVTVKFGIPVDETAPEVTINTLEKSYNTTSIVIN 438
+ N I+ ++N N Y S + I G P LE N I+
Sbjct: 616 FYQNNIDGLINNGTNNYFVSSEN---ITYYYNGNPYSGVLGNYWAGYLEADTNGDGIIDT 672
Query: 439 -VTATDLNLDSVIAEING---TENITLENISGNFVNSTYEFSEGLNTLKIYANDTSGNVN 494
T N +A I G T N + + ++ T E N TS +
Sbjct: 673 PYTENYTNDTKPLAGIWGVDLTSNAPKVDYNDGMIHITEE------------NFTSVSPY 720
Query: 495 SSENISFIVDVTNPELRIETSNVSNTSELTINVTATDNIELNYTN--------FSIVDNF 546
+ +++V T ++ V+++S V +DN+ + N + + N
Sbjct: 721 TGGGSAYVVITTPGYYILDCDYVNDSSIYKFIVIESDNVTFDGNNHWLNKTGDYVVYSNT 780
Query: 547 GNLV-NSTVNETNGSYQITLSVPADGIYNVTATAFDMVGNTNTTE---AINVTVDENAPL 602
N++ N TV S I ++ + + TA + G NT A +V V
Sbjct: 781 ENMLENVTVKNLMTSSSIYITASNSNVSSNTAQYVGVYGEYNTISSNTAYDVEVSGEYNT 840
Query: 603 VTINTLEKSYN-------TTSIVINVTATDLNLDSVIAEINGTENITLENISGYFVNSTY 655
++ NT+E + SI+ N T + L I + N + T++ I + +
Sbjct: 841 ISTNTVENRFYLAYDDGLNNSIIFNNTVNSIEL---IGDNNKISSNTVDYID---MEGDW 894
Query: 656 EFSEGSNTVKIYANDSFGHINSNENITFRVDLNSPEITINLIEGEYLNNGS-NVINFTVN 714
E+ +NT+ + ++ + N + N +E E G +I+
Sbjct: 895 EYLSNNNTISSNIITDYIYVYGDYNT----------LANNTVEDEIYTCGLYTIISSNTV 944
Query: 715 ESNLDKVTAFNGSTEIALENSTGNYLNSVALNEGVYNVTIRINDTAGNIAEKSLNFIIDT 774
++ D F+G E A + N+V +E IR++D + + S N + +
Sbjct: 945 TNSSDYAIDFDGEGEGAYATV---FNNTVLASE----YGIRLDDCDEDYSNISYNTVYSS 997
Query: 775 TAPVLT----------LNNPVNGTTFTTSSVSLNVSANDSLSNVSSVTAKIGSVRNVTLF 824
P++ LNN + T S ++ + +S + + K N
Sbjct: 998 EYPLIIGDEVTGCNIYLNNFIYTDTVNISGITPGETGKNSFLSPFKIEYKYNG--NSYSN 1055
Query: 825 FDGNYYTGNTGTLSNGNY---EIRIIATDLVGNVNSNET--------VNITIKVPAST-- 871
F GNY++ +GT ++ N + D + N+T +++ P +T
Sbjct: 1056 FLGNYWSDYSGTDADANGIGDTYYLYGCDDESDYLENDTAPLIGMWGIDLIPYTPVTTHT 1115
Query: 872 --SSGSSGSHYSSDLSDGITSSVIKNTVSNSNIVYGSEIDGKYAGKLKENLYNSEDYEIS 929
SSG G Y SD+SD I S VIKN VS++ +++G+EID ++A +L+E + N+E ++IS
Sbjct: 1116 TRSSGGGGRSYDSDISDEIDSKVIKNFVSSATVLFGNEIDQQFAEELRERIQNAEGFKIS 1175
Query: 930 GDTIIVGGPKYNVLANKYDSKFGISISNDYPGENNGIIQVLKVQDNTGNIIKSYKIVYIA 989
G+ +IVGGPK N A +Y+ +F + ISNDYPGEN G+IQV+ +QDN+G I+KSY IVYIA
Sbjct: 1176 GNAVIVGGPKANPFAREYNDQFEMPISNDYPGENKGVIQVMTIQDNSGKIVKSYTIVYIA 1235
Query: 990 GSDRLGTQAALEYFKTLNELPEGPIMVEWTENGPVL 1025
GSDRLGTQAALEYFKTL+ELP+GPIMVEWT NGPV+
Sbjct: 1236 GSDRLGTQAALEYFKTLDELPDGPIMVEWTANGPVV 1271
Score = 60.8 bits (146), Expect = 6e-13
Identities = 188/903 (20%), Positives = 342/903 (37%), Gaps = 101/903 (11%)
Query: 106 IKYAPNGTILWN-TSLHMGHYEYPESIAVDLDGNSYVTGYMNNDTTNNRNLV-IVKYAPN 163
+ Y N T N T + M Y Y I ++ G VT N+ ++ N+V ++K N
Sbjct: 21 VDYTINETDFENQTDVDMAGYTYHAFIVINESGEYQVTANFANNFSSIDNVVFLIKDTEN 80
Query: 164 GTILWNSAFSYNSNDCLGMVIALDDSGNAYVTGSAYISFGRSTILTTKYAPNGTMEWYKL 223
T+ N+ S+ +N G + ++ +T S ++ + + +E
Sbjct: 81 VTLDCNN-MSFTTNTIFGPNYLVYAYNSSNITVKNLNSNWTRDVILFENVNDSKIE---- 135
Query: 224 FDGGSSLGSGCGLALDDSGNAYVTGFRTGTDYDMVTAKYAPNGTLLWSSTLNQLGNDIGY 283
+ + L+DS ++ +D V AK + + +T+N Y
Sbjct: 136 --NSEIISERYPIVLEDSYGITISENTLTSDTYPVYAKSDLINSTISGNTINNTCESTSY 193
Query: 284 GLALDDS------GNAYVTGYVTNGTENMITLKYAPNGTILWNN-TIDYGSDRDYGF--- 333
G+ D + + + + Y N TI NN +++ GS +G
Sbjct: 194 GIYCDYAVINSIMSENTIISCADSSAYGIYCGDYFENCTISGNNISVNGGSFHAFGICCD 253
Query: 334 DVVLDNGGNAYFTGYVTDESRGQNIIAMKYAPN----GTNLWNSTYCPGINSWGNAIEVD 389
+ +LD+ ++ I A ++ N G N+ ++T + G E+D
Sbjct: 254 EYILDSTIENNVITVTSETYNAYGIFANEHIQNSTISGNNITSTTITSSAAAIGIYSELD 313
Query: 390 N-----SGNAYVTGSMSGYAIVTVKFGIPVDETAPEVTINTLEKSYNTTSIVINVTATDL 444
SGN +T + + Y+ D T TINT ++N+ I +N T+
Sbjct: 314 MLTSTFSGN-NITANSNHYSAGISSNRYVQDTTISGNTINT-NATHNSIDICVNRDLTNT 371
Query: 445 NL-DSVIAEINGTENITLENISGNFVNSTYEFSEGLNTLKIYANDTSGNVNSSENISFIV 503
N+ ++ I I+ N Y F + T I N+ + N ++ +
Sbjct: 372 NISENEITAISEAYN----------AYGIYTFGGKILTSTILENNITANSSTYDAYGIFA 421
Query: 504 DVTNPELRIETSNVSNTSELTINVTATDNIELNYTNFSIVDNFGNLVNSTVNETNGSYQI 563
D ++ + +S TIN A D + T + D ++VN+ + E
Sbjct: 422 DG-----YLQDTTISGN---TINTNAVD----DSTGIYVYDY--SIVNTDILE-----NA 462
Query: 564 TLSVPADGIYNVTATAFDMVGNTNTTEAINVTVDENAPLVTINTLEKSYNTTSIVINVTA 623
++ + Y V + + T + I +T D NA Y T SI+ N T
Sbjct: 463 ITAISGNKAYGVYTENYHIQDTTISGNNITITGDTNAR----GIYSSYYFTGSIISNNTI 518
Query: 624 TDLNLDSVIAEING--TENITLENISGYFVNSTY--EFSEGSNTVKIYANDSFGHINSNE 679
+S I N N NI + + S S + Y N+ +E
Sbjct: 519 DVTGNNSYILGFNSDFNNNEIYGNILSSLGSQAFGIYLSGDSGNYEFYDNNITVAGEGSE 578
Query: 680 NITFRVDLNSPEITINLIEGEYLNNGSNVINFTVNESNLDKVTAFNGSTEIALENSTGNY 739
I L+ P I Y NN ++ ++ ++ + V + + + + N T NY
Sbjct: 579 AIKLSYWLSGPNSNI------YRNNITSEQSYAIDIIHCQGVRFYQNNIDGLINNGTNNY 632
Query: 740 LNSVALNEGVYNVT----IRINDTAGNI-AEKSLNFIIDT--TAPVLTLNNPVNGT-TFT 791
S YN + N AG + A+ + + IIDT T P+ G
Sbjct: 633 FVSSENITYYYNGNPYSGVLGNYWAGYLEADTNGDGIIDTPYTENYTNDTKPLAGIWGVD 692
Query: 792 TSSVSLNVSANDSL-----SNVSSVTAKIGSVRNVTLFFDGNYYTGNTGTLSNGN-YEIR 845
+S + V ND + N +SV+ G + YY + +++ + Y+
Sbjct: 693 LTSNAPKVDYNDGMIHITEENFTSVSPYTGGGSAYVVITTPGYYILDCDYVNDSSIYKFI 752
Query: 846 IIATDLVGNVNSNETVNITIKVPASTSSGSSGSHYSSDLSDGITSSVIKNTVSNSNIVYG 905
+I +D V +N +N T +++ + + + + + +TSS I T SNSN+
Sbjct: 753 VIESDNVTFDGNNHWLNKTGDYVVYSNTENMLENVT--VKNLMTSSSIYITASNSNV--- 807
Query: 906 SEIDGKYAGKLKENLYNSEDYEISGDTIIVGGPKYNVLA-NKYDSKFGISISNDYPGENN 964
S +Y G E YN+ + D + G +YN ++ N +++F ++ + G NN
Sbjct: 808 SSNTAQYVGVYGE--YNTISSNTAYDVEVSG--EYNTISTNTVENRFYLAYDD---GLNN 860
Query: 965 GII 967
II
Sbjct: 861 SII 863