Pairwise Alignments
Query, 1026 a.a., SBBP repeat-containing protein from Methanococcus maripaludis S2
Subject, 1050 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ
Score = 248 bits (634), Expect = 1e-69
Identities = 260/932 (27%), Positives = 400/932 (42%), Gaps = 195/932 (20%)
Query: 271 SSTLNQLGNDI--GYGLALDDSGNAYVTGYVTNGTENMITLKYAPNGTILWNNTID--YG 326
S + GN I GY D N+ +TG N + N ++ NN I+ Y
Sbjct: 129 SENITISGNTITAGYNGIEIDGNNSVITGNTITNLLNYWGISIGANNCLVANNVINSNYS 188
Query: 327 SDRDYGFDVVLDN-----GGNAYFTGYVTDESRGQNIIAMK--YAPNGTNLWNSTYCPG- 378
+ D G+++ ++N G + Y+ ++ G I K + N N+ G
Sbjct: 189 INMD-GYNLTVENNALTSGIHCYYVSIYSNTLSGNTINGKKLYFYKNMENIGEIPSDAGQ 247
Query: 379 ---------------INSWGNAIEVDNSGNAYVTGSMSGYAIVTVKFGIPVDETAPEVTI 423
N AI + +S +V I+ + + E T
Sbjct: 248 VILVNCTNAQISNINFNEKAIAISIADSTGVFVENCTINPNIIYENYVSIYNSENCEFTG 307
Query: 424 NTLEKSYNTTSIVINVTATDLNLDSVIAEINGTENITLENISGNFVNSTY---------- 473
NT + S +S+V ++A D+ D++ N E I + NF NS
Sbjct: 308 NTFKVS--ESSLVYGISALDV--DNITISKNKFEGIAVPGYGVNFTNSRIFKNIFENVSL 363
Query: 474 ---EFSEGLNTLKIYAND-----------TSGNVNSSENISFIVDVTNPELRI------- 512
F + +Y N+ S +NS N+S+ + T
Sbjct: 364 APLAFDYNCSGTYVYLNNFINCSWNRGINESITLNSPLNVSYTYNGTTYSTIAGNYWSDY 423
Query: 513 -ETSNVSNTSELTINVTATDNIELNYT---NFSIVDNFGNLVNSTVNETNGSYQITLSVP 568
ET+ N +I TD++ +Y FS+VD G +++ T+++ + ++ P
Sbjct: 424 NETNANVNEGIWSIPYIITDSVNDSYPLAKPFSMVDENG-IIHITLDDVDSENGYVITKP 482
Query: 569 ADGIYNVTATAFDMVGNTNTTEAINVTVDENAPLVTINTLEKSYNTTSIVINVT------ 622
+ + T G + ++ NVT D N +T + Y+ T + NVT
Sbjct: 483 GTYVLDENITN----GGSILIDSSNVTFDGNGHFITNSESYAVYSNTEMFENVTVKNVIT 538
Query: 623 -------ATDLNLDSVIA---EINGTENITLENI--SGYFVNSTYEFSEGSNTV------ 664
A++ N+ S A EING N NI S +VN + + +NT+
Sbjct: 539 LSSIYIKASNSNVSSNTAYNVEINGNYNTISSNIVKSTMYVNRYFPWGL-NNTISNNTAY 597
Query: 665 ---------KIYAN-------------------------------DSFGHINS--NENIT 682
KIY+N +S+G NS + N+
Sbjct: 598 LILYWGYDSKIYSNAVDYALASYGNNNNISSNVIGSESTHGDNSIESYGDNNSISSNNVD 657
Query: 683 FRVDL--NSPEITINLIEGEY-LNNGSNVINFTVNESNL---DKVTAFNGSTEIALE--- 733
+ + L N I+ N+++ G N I+ + + ++ + T + +T I
Sbjct: 658 YMIYLKGNYNTISSNIVQDHISAGGGYNTISSNIVQDHIWTRGQYTLISSNTVINASYYA 717
Query: 734 -NSTGNYLNSVALNEGVYNVTI---RINDTAGNIAEKSLNFIIDT--------------T 775
+ G+Y + V+N T+ ++ N E N +T T
Sbjct: 718 IDPNGDYDYGIDAYATVFNNTVLASKVGIWLDNYCEGYSNITQNTVYADDYPIIIGDNIT 777
Query: 776 APVLTLNNPVN-GTTFTTSSVSLNVSANDSLSNVSSVTAKIGSVRNVTLFFDGNYYTGNT 834
+ LNN ++ G + S + N + N+SL VS + N GNY++ +
Sbjct: 778 GCNIYLNNFIHTGNSTDISGIMPNTTVNNSL--VSPFEIEYNYNGNTYSNILGNYWSDYS 835
Query: 835 GTLSNGN---------------------YEIRIIATD---LVGNVNSNETVNITIKVPAS 870
GT ++GN Y+I + D L+ N NE N +
Sbjct: 836 GTDTDGNGIGDTYYIYGCDYERTYGEDYYDIDYLENDTAPLIDMWNGNEIGNYV--ATSR 893
Query: 871 TSSGSSGSHYSSDLSDGITSSVIKNTVSNSNIVYGSEIDGKYAGKLKENLYNSEDYEISG 930
+S GS G Y SD+SD I S VIKN VS+++++YG+EID +YA +L+E + N+ Y+ISG
Sbjct: 894 SSGGSGGRSYDSDISDEIESKVIKNFVSSASVIYGNEIDQQYAEELREKIQNANGYKISG 953
Query: 931 DTIIVGGPKYNVLANKYDSKFGISISNDYPGENNGIIQVLKVQDNTGNIIKSYKIVYIAG 990
+ +IVGGP N A +Y+ +F + ISNDYPGEN GIIQVLKVQDNTG I++SY IVYIAG
Sbjct: 954 NAVIVGGPLSNGFAREYNDQFEMPISNDYPGENKGIIQVLKVQDNTGKIVQSYTIVYIAG 1013
Query: 991 SDRLGTQAALEYFKTLNELPEGPIMVEWTENG 1022
SDRLGTQAALEYFKTL+ELPEGPIMVEWTENG
Sbjct: 1014 SDRLGTQAALEYFKTLDELPEGPIMVEWTENG 1045
Score = 52.0 bits (123), Expect = 2e-10
Identities = 148/687 (21%), Positives = 252/687 (36%), Gaps = 186/687 (27%)
Query: 429 SYNTTSIVINVTATDLNLDSVIAE---INGTENITLENISGNFVNSTYEFSEGLNTLKIY 485
S T I N+ ++ + +I+E N TE+IT N+ G +NS + LN +
Sbjct: 13 SAETVPIDYNINNSNYDTAKMISEPGIYNLTEDIT--NLGGIEINSD---NVTLNGQGYF 67
Query: 486 ANDTSGN---VNSSENISFIVDVTNPELRIETSNVSNTSELTINVTATDNIELNYTNFSI 542
N TS N + +NI+ +TN L N S IN+T D
Sbjct: 68 LNVTSNNGIQASGHKNIT----ITNVNLYASGENAS-----AINITGAD----------- 107
Query: 543 VDNFGNLVNSTVNETNGSYQITLSVPADGI-YNVTATAFDMVGNTNTTEAINVTVDENAP 601
+ F N ++S + DGI N + + GNT T + +D N
Sbjct: 108 ITIFANTISSNIG--------------DGICINENSENITISGNTITAGYNGIEIDGNNS 153
Query: 602 LVTINTLEKSYNTTSIVINVTATDLNLDSVIAE--INGTENITLENISGYFVNSTYEFSE 659
++T NT+ N I I + ++A IN +I ++ + N+
Sbjct: 154 VITGNTITNLLNYWGISIGAN------NCLVANNVINSNYSINMDGYNLTVENNALTSGI 207
Query: 660 GSNTVKIYANDSFGHINSNENITFRVDLNSPEITINLIEGEYLNNGSNVINFTVNESNLD 719
V IY+N G+ + + + F ++ + GE ++ VI + +
Sbjct: 208 HCYYVSIYSNTLSGNTINGKKLYFYKNMEN--------IGEIPSDAGQVILVNCTNAQIS 259
Query: 720 KVTAFNGSTEIALENSTGNYLNSVALNEG-VYNVTIRINDT-----AGN---IAEKSLNF 770
+ + I++ +STG ++ + +N +Y + I ++ GN ++E SL +
Sbjct: 260 NINFNEKAIAISIADSTGVFVENCTINPNIIYENYVSIYNSENCEFTGNTFKVSESSLVY 319
Query: 771 ---IIDTTAPVLTLNN------PVNGTTFTTSSVSLNVSANDSLSNVS------------ 809
+D ++ N P G FT S + N+ N SL+ ++
Sbjct: 320 GISALDVDNITISKNKFEGIAVPGYGVNFTNSRIFKNIFENVSLAPLAFDYNCSGTYVYL 379
Query: 810 ------------SVTAKIGSVRNVTLFFD--------GNY---YTGNTGTLSNGNYEIRI 846
+ + + S NV+ ++ GNY Y ++ G + I
Sbjct: 380 NNFINCSWNRGINESITLNSPLNVSYTYNGTTYSTIAGNYWSDYNETNANVNEGIWSIPY 439
Query: 847 IATDLVGN----------VNSNETVNITIKVPAS------------------TSSGSSGS 878
I TD V + V+ N ++IT+ S T+ GS
Sbjct: 440 IITDSVNDSYPLAKPFSMVDENGIIHITLDDVDSENGYVITKPGTYVLDENITNGGSILI 499
Query: 879 HYSSDLSDG----ITSS---------------VIKNTV---------SNSNI----VYGS 906
S+ DG IT+S +KN + SNSN+ Y
Sbjct: 500 DSSNVTFDGNGHFITNSESYAVYSNTEMFENVTVKNVITLSSIYIKASNSNVSSNTAYNV 559
Query: 907 EIDGKY----AGKLKENLYNSEDYEISGDTIIVGGPKYNVLANKYDSKFGISISNDYP-- 960
EI+G Y + +K +Y + + + I Y +L YDSK S + DY
Sbjct: 560 EINGNYNTISSNIVKSTMYVNRYFPWGLNNTISNNTAYLILYWGYDSKI-YSNAVDYALA 618
Query: 961 --GENNGIIQVLKVQDNT--GNIIKSY 983
G NN I + ++T N I+SY
Sbjct: 619 SYGNNNNISSNVIGSESTHGDNSIESY 645
Score = 43.5 bits (101), Expect = 8e-08
Identities = 95/418 (22%), Positives = 157/418 (37%), Gaps = 67/418 (16%)
Query: 28 NDTFDYGDGRDIAVDEDGNSYVTGGKYDIVTIKYAPNGTRLWNSTLDFGATSEVGYSIAL 87
N TFD G+G I E Y ++ VT+K + ++ + +S Y++ +
Sbjct: 503 NVTFD-GNGHFITNSESYAVYSNTEMFENVTVKNVITLSSIYIKASNSNVSSNTAYNVEI 561
Query: 88 DNGGNAYVTGRGNDNFVTIKYAP---NGTILWNTSLHMGHYEYPESI---AVDL------ 135
+ N + +Y P N TI NT+ + ++ Y I AVD
Sbjct: 562 NGNYNTISSNIVKSTMYVNRYFPWGLNNTISNNTAYLILYWGYDSKIYSNAVDYALASYG 621
Query: 136 DGNSYVTGYMNNDTTNNRNLVIVKYAPNGTILWNSA----FSYNSNDCLGMVIALD--DS 189
+ N+ + + +++T+ N I Y N +I N+ + + + + I D +
Sbjct: 622 NNNNISSNVIGSESTHGDN-SIESYGDNNSISSNNVDYMIYLKGNYNTISSNIVQDHISA 680
Query: 190 GNAYVTGSA------------YISFGRSTILTTKY---APNGTMEW----YKLFDGGSSL 230
G Y T S+ Y +T++ Y PNG ++ Y + L
Sbjct: 681 GGGYNTISSNIVQDHIWTRGQYTLISSNTVINASYYAIDPNGDYDYGIDAYATVFNNTVL 740
Query: 231 GSGCGLALDDSGNAYVTGFRTGTDYDMVTAKYAPNGTLLWSSTLN----QLGNDIGYGLA 286
S G+ LD+ Y G+ T YA + ++ + L N I G +
Sbjct: 741 ASKVGIWLDN----YCEGYSNITQ----NTVYADDYPIIIGDNITGCNIYLNNFIHTGNS 792
Query: 287 LDDSGNAYVTGYVTNGTENMITLKYAPNGTILWNNTIDYGSDRDYGFDVVLDNGGNAYFT 346
D SG T V N + ++Y NG N +Y SD G D + G+ Y+
Sbjct: 793 TDISGIMPNT-TVNNSLVSPFEIEYNYNGNTYSNILGNYWSDYS-GTDTDGNGIGDTYYI 850
Query: 347 -GYVTDESRGQNIIAMKYAPNGTNLWNSTYCPGINSW-GNAIEVDNSGNAYVTGSMSG 402
G + + G++ + Y N T P I+ W GN I GN T SG
Sbjct: 851 YGCDYERTYGEDYYDIDYLENDT-------APLIDMWNGNEI-----GNYVATSRSSG 896
Score = 41.2 bits (95), Expect = 4e-07
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 28/245 (11%)
Query: 768 LNFIIDTTAPVLTLNNPVNGTTFTTSSVSLNVSANDSLSNVSSVTAKIGSVR----NVTL 823
++FI +A + ++ +N + + T+ + + + N++ +G + NVTL
Sbjct: 6 ISFIGFVSAETVPIDYNINNSNYDTAKMI----SEPGIYNLTEDITNLGGIEINSDNVTL 61
Query: 824 FFDGNYY--TGNTGTLSNGNYEIRIIATDLVGNVNSNETVNIT---IKVPASTSSGSSGS 878
G + T N G ++G+ I I +L + + +NIT I + A+T S + G
Sbjct: 62 NGQGYFLNVTSNNGIQASGHKNITITNVNLYASGENASAINITGADITIFANTISSNIGD 121
Query: 879 HYS-SDLSDGITSSVIKNTVSNSNIVYGSEIDGK---YAGKLKENLYNSEDYEISGDTII 934
++ S+ IT S NT++ G EIDG G NL N I + +
Sbjct: 122 GICINENSENITIS--GNTITAG--YNGIEIDGNNSVITGNTITNLLNYWGISIGANNCL 177
Query: 935 VGGPKYNVLANKYDSKF-GISISNDYPGENNGI-IQVLKVQDNT--GNIIKSYKIVYIAG 990
V NV+ + Y G +++ + +GI + + NT GN I K+ +
Sbjct: 178 VAN---NVINSNYSINMDGYNLTVENNALTSGIHCYYVSIYSNTLSGNTINGKKLYFYKN 234
Query: 991 SDRLG 995
+ +G
Sbjct: 235 MENIG 239