Pairwise Alignments

Query, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 31/188 (16%)

Query: 10  WHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLN 69
           W++ G LL    ++ EAL  Y+  L   P    A+  + +V   L    +A++ +   L 
Sbjct: 33  WNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALA 92

Query: 70  MNPSYIPAIKNKKQVEEKLKKQES--ENYNK-----------FSKLGVENYKQGNFEKSL 116
           ++        N+  V  KL + E    +Y +           ++  G   ++QG + +++
Sbjct: 93  IDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQGRYREAV 152

Query: 117 SYFEKAFEINPYSETLRKNIETTRLKLKEILPIRWNNKGVEYYKVKNYQKALECFEKAVK 176
            ++E++  I+P   +                   W   G  Y  V    +AL C ++A+ 
Sbjct: 153 RHYEQSVAIDPDQSS------------------AWRQLGQIYLSVDQPDQALRCLDQAIA 194

Query: 177 LNPKFESA 184
           L P+  +A
Sbjct: 195 LQPQQATA 202



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 39/199 (19%)

Query: 8   QKWHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSV 67
           Q W + G  L    +Y EA+  Y++ ++  PD   A    G ++L + + ++AL+C +  
Sbjct: 133 QAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQA 192

Query: 68  LNMNPSYIPAIKNKKQVEEKLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEI-- 125
           + + P    A                     ++  G   Y  G +  +L+ +E A  +  
Sbjct: 193 IALQPQQATA---------------------WTWRGHALYNLGQYAAALTSYENAELLGD 231

Query: 126 NPYSETLRKNIETTRLKLKE--------ILPIRWNNKGVE--YYK------VKNYQKALE 169
            P   ++++     +L+  E        ILP        E  YY+      ++++  AL 
Sbjct: 232 RPLLLSIQRGHTLAQLERYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALA 291

Query: 170 CFEKAVKLNPKFESALKNK 188
            F++A+  NP    A  N+
Sbjct: 292 AFDQAIAGNPDLAEAWYNR 310



 Score = 35.8 bits (81), Expect = 1e-06
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 39/161 (24%)

Query: 27  LECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAIKNKKQVEE 86
           L  YD  L + P +      +G++  +L  + +AL  +N  L + P    A+ N+  V E
Sbjct: 16  LAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLE 75

Query: 87  KLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEINPYSETLRKNIETTRLKLKEI 146
            L                     G   +++  +E+A  I+                    
Sbjct: 76  HL---------------------GRLPEAVESYEQALAIDRQQ----------------- 97

Query: 147 LPIRWNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKN 187
            P  WNN+G+   K+   + A+  +++A+ L   +  A  N
Sbjct: 98  -PEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWAN 137



 Score = 33.9 bits (76), Expect = 4e-06
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 14  GALLCNSEKYAEALECYDKILSYYPDDFLA--VFGKGMVFLKLKEYEKALQCFNSVLNMN 71
           G  L   E+Y EAL  Y  IL     +  A   + +G+V+  L+++  AL  F+  +  N
Sbjct: 241 GHTLAQLERYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGN 300

Query: 72  PSYIPAIKNKKQVEEKL 88
           P    A  N+  +  +L
Sbjct: 301 PDLAEAWYNRAALHARL 317



 Score = 33.5 bits (75), Expect = 5e-06
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 151 WNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNKTMV 191
           WNN+G+   ++  + +AL  +  A+++ P+ + AL N+ +V
Sbjct: 33  WNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIV 73