Pairwise Alignments

Query, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 156 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 41.6 bits (96), Expect = 7e-09
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 8   QKWHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSV 67
           + W+    L     +Y+E+LE  D+++   P  F A+ GKG+    L +Y +A+  F + 
Sbjct: 75  EAWNRRAVLHYLQGRYSESLEDCDRVIDLNPIHFGALHGKGLSLAALGQYREAITAFRAA 134

Query: 68  LNMNP 72
           L + P
Sbjct: 135 LEIQP 139



 Score = 29.3 bits (64), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 151 WNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNK 188
           WN + V +Y    Y ++LE  ++ + LNP    AL  K
Sbjct: 77  WNRRAVLHYLQGRYSESLEDCDRVIDLNPIHFGALHGK 114



 Score = 25.4 bits (54), Expect = 5e-04
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 82  KQVEEKLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEINPYSETLRKNIETTRL 141
           +Q+   L  Q  +    +++  V +Y QG + +SL   ++  ++NP        I    L
Sbjct: 60  EQLLSDLINQLPDFAEAWNRRAVLHYLQGRYSESLEDCDRVIDLNP--------IHFGAL 111

Query: 142 KLKEILPIRWNNKGVEYYKVKNYQKALECFEKAVKLNP 179
                     + KG+    +  Y++A+  F  A+++ P
Sbjct: 112 ----------HGKGLSLAALGQYREAITAFRAALEIQP 139