Pairwise Alignments

Query, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 287 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 45.8 bits (107), Expect = 7e-10
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 21/104 (20%)

Query: 23  YAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAIKNKK 82
           Y+EA     + L+  PD   A+F  G V+L  K+Y  A+  F   + + P +  AI N  
Sbjct: 126 YSEAASFLQRGLAIKPDSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINN-- 183

Query: 83  QVEEKLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEIN 126
                              LG+ +Y+QG+  ++L+Y+ +A E++
Sbjct: 184 -------------------LGLVSYEQGDRNQALNYWNRAIELS 208



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 18/106 (16%)

Query: 86  EKLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEINPYSETLRKNIETTRLKLKE 145
           EK +K           LG   ++QGN+ ++ S+ ++   I P S     ++         
Sbjct: 100 EKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDSSGALFDL--------- 150

Query: 146 ILPIRWNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNKTMV 191
                    G  Y   K Y  A+  F+KAV++ P F  A+ N  +V
Sbjct: 151 ---------GNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLV 187



 Score = 24.3 bits (51), Expect = 0.002
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 21  EKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMN 71
           ++Y  A+  + K +   PD + A+   G+V  +  +  +AL  +N  + ++
Sbjct: 158 KQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWNRAIELS 208