Pairwise Alignments

Query, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 683 a.a., tetratricopeptide repeat (TPR) family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 46/84 (54%)

Query: 26  ALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAIKNKKQVE 85
           A+E +D ++   PD+ +A+F + ++  +  +Y  A++ + +V+N  P+++    ++ +  
Sbjct: 279 AIEDFDFVIQMEPDNMMAIFNRALLRAQTGDYRGAIKDYTTVINQYPNFLAGYYHRAEAR 338

Query: 86  EKLKKQESENYNKFSKLGVENYKQ 109
           +K+  ++    + F  L  +  KQ
Sbjct: 339 KKIGDKKGAEQDDFKLLKAQLDKQ 362



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 31/221 (14%)

Query: 2   RNNYGIQKWHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKAL 61
           RN + +  +   G       K+  A+E Y K L Y P++        +  ++ K+Y+ A 
Sbjct: 85  RNPFVVGAYQVRGLARIRQSKFDGAIEDYQKALHYDPENITLWHNLTLSHIQKKDYDAAK 144

Query: 62  QCFNSVLNMNPSYIPAIKNKKQVEEKLKKQ-----------ESENY--NKFSKLGVENYK 108
           +   S+L ++P Y  A   + +V  + K             E + Y  + +S   +   +
Sbjct: 145 EDLESLLKVSPRYTRAYLMRGEVSLQQKDTVAALKDFNTALELDKYDPDAWSARAIVRLQ 204

Query: 109 QGNFEKSLSYFEKAFEINP--------------YSETLRKNIETTRLKLKEILP---IRW 151
           Q N+ ++ S  ++A  ++               +   LR  +    L L +I P   I  
Sbjct: 205 QSNYAEAESDLDRAIHLSAKNAGNYINRALARFHQNNLRGAMSDYDLAL-DIDPNNFIGH 263

Query: 152 NNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNKTMVQ 192
            N+G+   +V +  +A+E F+  +++ P    A+ N+ +++
Sbjct: 264 YNRGLLRARVGDDNRAIEDFDFVIQMEPDNMMAIFNRALLR 304



 Score = 37.7 bits (86), Expect = 5e-07
 Identities = 28/164 (17%), Positives = 67/164 (40%), Gaps = 39/164 (23%)

Query: 21  EKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAIKN 80
           E Y  +++ ++++++  P  +   F + +  + L++Y+ A    +  +  NP  + A   
Sbjct: 36  EDYVLSIQYFNQVINAKPYLYEPYFFRALAKVNLEDYQGAEADCDEAIKRNPFVVGA--- 92

Query: 81  KKQVEEKLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEINPYSETLRKNIETTR 140
                             +   G+   +Q  F+ ++  ++KA   +P + TL        
Sbjct: 93  ------------------YQVRGLARIRQSKFDGAIEDYQKALHYDPENITL-------- 126

Query: 141 LKLKEILPIRWNNKGVEYYKVKNYQKALECFEKAVKLNPKFESA 184
                     W+N  + + + K+Y  A E  E  +K++P++  A
Sbjct: 127 ----------WHNLTLSHIQKKDYDAAKEDLESLLKVSPRYTRA 160



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 31  DKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAIKNK 81
           DK+++  PD   A + +  V   LK+Y  A+  ++  + ++P +  A  N+
Sbjct: 593 DKVITLAPDFVYAYYNRANVAAMLKDYRAAIVDYDKAIQLSPDFADAYFNR 643



 Score = 30.8 bits (68), Expect = 6e-05
 Identities = 28/153 (18%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 45  FGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAIKNKKQVEEKLKKQESENYNKFSKLGV 104
           F + + F  ++++  A+      + ++  + PA   +  +  + K+ E   Y K  +   
Sbjct: 514 FARAIDFYLVQDFSSAVADLTQAILLDGDFFPAYFMRALI--RCKQLE---YQKAEQAAE 568

Query: 105 ENYKQGNFEKSLSYFEKAFEINPYSETLRKNIETTRLKLKEILPIRWNNKGVEYYKVKNY 164
            +   G   K +S  +         E +RK+++       + +   +N   V    +K+Y
Sbjct: 569 ADMPSGAAVKEVSAVDY--------EVVRKDLDKVITLAPDFVYAYYNRANVAAM-LKDY 619

Query: 165 QKALECFEKAVKLNPKFESALKNKTMVQKLIKN 197
           + A+  ++KA++L+P F  A  N+ +    + N
Sbjct: 620 RAAIVDYDKAIQLSPDFADAYFNRGLTHIFLGN 652