Pairwise Alignments

Query, 747 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 874 a.a., ATP-dependent helicase from Methanococcus maripaludis JJ

 Score = 87.4 bits (215), Expect = 3e-21
 Identities = 113/450 (25%), Positives = 197/450 (43%), Gaps = 73/450 (16%)

Query: 17  PPQKKVIDEGLFDKTKNFLICIPTASGKTLIGEMALLNHI--LDENKNLTGK-KGLFIVP 73
           PPQ+  I +  F +  N LIC PT SGKTL   +A++N +  +++ + L      L+I P
Sbjct: 36  PPQRLAIPKIHFGR--NTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISP 93

Query: 74  LKALAN-------EKFDEFKEKYEKYG-----IKVGLSIGD---FDTKENLSKF-HIIIT 117
           LK+LAN       E   E KE  ++ G     I+  +  GD   ++  + L K  HI+ T
Sbjct: 94  LKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNT 153

Query: 118 TSEKLDSLMRHEV--EWINDVSLAVIDEIHLIGDNDRGGTLEVILTKLKNLNAQ---IVG 172
           T E L  ++      E +  V   +IDEIH + DN RG  L + L +L+ +  Q    +G
Sbjct: 154 TPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLREITNQEFLRIG 213

Query: 173 LSATIGNPEELSNWLNAKLIVDEWRPVELKKGIYFENELEFVKSPAKKIKQVSKNNITDL 232
            SAT+   E ++++L         RPVE+    +  +    +  P   +   +   I++ 
Sbjct: 214 CSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRSYDLKLLCPVDDLINKTPKEISEK 273

Query: 233 IVDS----VEEKGSCLIFCNSKRNAVGEAKKHNLTKYLTRTEQHELNKLSEEILSILDTP 288
           + +     ++   + LIF N++  A  E   +NL K                       P
Sbjct: 274 LYEKLDRLIQTHENTLIFTNTRGGA--ERVLYNLRKRY---------------------P 310

Query: 289 TETCKALSECIKKGIAFHHAGLTYQHRKIVEDGFRNRLIKVICCTPTLSAGLNLPCRRAI 348
            +  +  S C       HH  L+ + R  +E+  ++  +K    + +L  G+++P    +
Sbjct: 311 EKYDETNSGC-------HHGSLSKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLV 363

Query: 349 VRDIKRYSQNGLVDIPRMEIQQCIGRAGRPGLDPYGEG-IIYIKNEKEIEKAY---EILT 404
           V+     S   ++        Q IGRAG  G+    +G II +  ++ +E A    + + 
Sbjct: 364 VQIGSPKSVKTML--------QRIGRAGH-GIGKVAKGRIIALDRDELLECAVMLKKAMD 414

Query: 405 GSVENIYSKLANQKVLRIHILGLISTGEIK 434
           G ++ ++       VL  HI G+   G I+
Sbjct: 415 GFIDKVHIPKGPLDVLIQHIYGIAINGYIE 444