Pairwise Alignments
Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2
Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942
Score = 77.0 bits (188), Expect = 8e-19
Identities = 77/351 (21%), Positives = 141/351 (40%), Gaps = 18/351 (5%)
Query: 24 NSGKYQKS---IEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDL 80
N G +Q + ++ L EP+N W +G L + A SY AL I P
Sbjct: 5 NGGSHQSLEALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQ 64
Query: 81 EIIKSYTMLLNSLELFKESVEILKNVSESDDKIIEIL---GDAYLKTGKFNEAILQYNNI 137
E + + ++L L E+VE + D + E+ G K G+ +AI Y
Sbjct: 65 EALNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQA 124
Query: 138 LERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEK 197
+ Y + A G AL ++ EA+ YE+ + I P + W+ +G + +V + ++
Sbjct: 125 IALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQ 184
Query: 198 AIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLY 257
A++ D + +G AL LG+ AL Y + + G
Sbjct: 185 ALRCLDQAIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTL 244
Query: 258 YDTEDYETAI--YYLELANERNPLNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYA 315
E YE A+ Y L + G + L+++ L ++A+ + + A
Sbjct: 245 AQLERYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNPDLA 304
Query: 316 KAWCYKGYILNLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTIGKED 366
+AW + + L++ AI ++AI+++ + Y+++ ED
Sbjct: 305 EAWYNRAALHARLDQPVAAIADLQQAIALD----------PDTYRSLAAED 345
Score = 58.5 bits (140), Expect = 3e-13
Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 34/221 (15%)
Query: 159 KKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLS 218
+ + L Y+ L+ P + +W N G + ++ +A+ Y+ L +
Sbjct: 10 QSLEALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNN 69
Query: 219 KGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNP 278
+ L LG+ EA++ Y + L Q E W G+
Sbjct: 70 RAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGI----------------------- 106
Query: 279 LNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCY 338
+L KLGR + +Y ++A+ + YA+AW G+ L R+ EA+ Y
Sbjct: 107 ----VLRKLGRLEDAIASY-------QQAIALAAHYAQAWANCGFALWQQGRYREAVRHY 155
Query: 339 KKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVNLE 379
+++++I+ + S W L +Y ++ + D + + A+ L+
Sbjct: 156 EQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQ 196
Score = 39.7 bits (91), Expect = 1e-07
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 266 AIYYLELANERNPLNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYIL 325
A Y L +E P N ++ G +L + + L AL+ + +A + +L
Sbjct: 17 AAYDFRLRHE--PRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVL 74
Query: 326 NLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVNLENH 381
L R EA++ Y++A++I++ + W + V + +G+ + + +Y+ A+ L H
Sbjct: 75 EHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAH 130
Score = 38.1 bits (87), Expect = 4e-07
Identities = 30/171 (17%), Positives = 72/171 (42%), Gaps = 5/171 (2%)
Query: 19 GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
G + G+Y++++ ++ +++ +P AW G Y + + A ++A++++P
Sbjct: 139 GFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQ 198
Query: 79 DLEIIKSYTMLLNSLELFKESVEILKNVSESDDKIIEI---LGDAYLKTGKFNEAILQYN 135
L +L + ++ +N D+ + + G + ++ EA+ Y
Sbjct: 199 QATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASYA 258
Query: 136 NILER--KPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKN 184
IL + E+ +G L+ + AL +++ + +P E W N
Sbjct: 259 AILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYN 309
Score = 36.6 bits (83), Expect = 1e-06
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 17 ETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKA--LS 74
+ G Y + + +++ ++ + +P+ AW ++G+A + LG+ A SYE A L
Sbjct: 171 QLGQIYLSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLG 230
Query: 75 IRPNDLEIIKSYTMLLNSLELFKESV 100
RP L I + +T L LE ++E++
Sbjct: 231 DRPLLLSIQRGHT--LAQLERYEEAL 254