Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 255 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 31/126 (24%), Positives = 61/126 (48%)

Query: 118 GDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPY 177
           G+  +      EAI  YN  +   P   +    +GTA  GL+++D+A+  Y++ L+ SP 
Sbjct: 66  GNVRVSQNHLEEAIADYNESVRLAPNAPDPYLNRGTAWEGLQEWDKAIADYQQALQFSPG 125

Query: 178 DTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYT 237
           D     N+GN   ++ +YE+A+  ++       G      +    L +L +T++A+    
Sbjct: 126 DAAAHNNLGNVRLSLGEYEQALSEFETASRLAPGFAFAGANVALTLFQLDRTSDAIQRMR 185

Query: 238 KVLEKH 243
            ++ K+
Sbjct: 186 SLVRKY 191



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 25/109 (22%), Positives = 51/109 (46%)

Query: 125 GKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKN 184
           G+F  A   ++  +   P    + + +G   V     +EA+  Y + ++++P   + + N
Sbjct: 39  GEFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADYNESVRLAPNAPDPYLN 98

Query: 185 IGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEAL 233
            G A+  +++++KAI  Y   L    GD     + G+    LG+  +AL
Sbjct: 99  RGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQAL 147



 Score = 30.0 bits (66), Expect = 8e-05
 Identities = 26/166 (15%), Positives = 67/166 (40%), Gaps = 3/166 (1%)

Query: 14  KLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKAL 73
           +L ++  E    G++ ++ + +++ +   P N   W  +GN        + A   Y +++
Sbjct: 27  ELYQSALEASYRGEFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADYNESV 86

Query: 74  SIRPNDLEIIKSYTMLLNSLELFKESVEILKNV---SESDDKIIEILGDAYLKTGKFNEA 130
            + PN  +   +       L+ + +++   +     S  D      LG+  L  G++ +A
Sbjct: 87  RLAPNAPDPYLNRGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQA 146

Query: 131 ILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISP 176
           + ++       P +    A     L  L +  +A++    +++  P
Sbjct: 147 LSEFETASRLAPGFAFAGANVALTLFQLDRTSDAIQRMRSLVRKYP 192



 Score = 28.1 bits (61), Expect = 3e-04
 Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 34/176 (19%)

Query: 160 KFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSK 219
           +F  A +++ + + ++P +  +W N GN   +    E+AI  Y                 
Sbjct: 40  EFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADY----------------- 82

Query: 220 GDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPL 279
                     NE++ L     +       P+   G  +   ++++ AI   + A + +P 
Sbjct: 83  ----------NESVRLAPNAPD-------PYLNRGTAWEGLQEWDKAIADYQQALQFSPG 125

Query: 280 NPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAI 335
           + +    LG   + L  Y + L   E A      +A A       L  L+R  +AI
Sbjct: 126 DAAAHNNLGNVRLSLGEYEQALSEFETASRLAPGFAFAGANVALTLFQLDRTSDAI 181



 Score = 28.1 bits (61), Expect = 3e-04
 Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 12  PKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEK 71
           P   L  GT +    ++ K+I  + + L   P +  A    GN    LG+ + A   +E 
Sbjct: 93  PDPYLNRGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQALSEFET 152

Query: 72  ALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSESDDKIIEI---LGDAYLKTGKFN 128
           A  + P       +  + L  L+   ++++ ++++        ++   L     + G+  
Sbjct: 153 ASRLAPGFAFAGANVALTLFQLDRTSDAIQRMRSLVRKYPNFADMRAALTAVLWQQGQRG 212

Query: 129 EAILQYNNILERKPRYKEI 147
           EA   +  ++    RY+++
Sbjct: 213 EAESNWVAVMGLDTRYRDL 231