Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 609 a.a., signal peptide protein from Sinorhizobium meliloti 1021

 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 71/334 (21%), Positives = 136/334 (40%), Gaps = 9/334 (2%)

Query: 55  AYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYT---MLLNSLELFKESVEILKNVSESDD 111
           A   L + +  + + +KAL        ++ +YT    L  S+E  K   + ++N  +   
Sbjct: 228 AVEALARFEAREGNKQKALDTISVGESLVNNYTPLEALRKSVEEGKPQEQQVRNAVQGAA 287

Query: 112 KIIEILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKV 171
            ++  +G A  + G  +   L         P   +IL   G     LKK +EA+E+Y+ V
Sbjct: 288 AVLFSIGGALNREGAEDIVSLYLQTARRLDPESADILVMLGGIAENLKKPEEAIELYKSV 347

Query: 172 LKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNE 231
            + SP        +G +   + K ++A +     ++    +    L+ G  L       E
Sbjct: 348 PESSPMRRLSELQLGLSLAGIGKVDEAKKHLKGLIDVDPKNIRNYLAYGSVLSDAKNYKE 407

Query: 232 ALDLYTKVLEK--HIQNYEPWC---RVGLLYYDTEDYETAIYYLELANERNPLNPSILVK 286
             +LY + +     +     W    + G+ Y   + +E A      A E NP  P +L  
Sbjct: 408 MGELYDRAVAAIGPVPKRSDWTVFFQRGIAYERQKLWEKAEPNFRKALELNPDQPQVLNY 467

Query: 287 LGRTYVKLR-NYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISIN 345
           LG ++V +  N   GLE + KA++   +        G+    + R  EA+   ++A  + 
Sbjct: 468 LGYSWVDMNINLEDGLEMIRKAVELKPDDGYIVDSLGWAYFRMNRFDEAVTELERAAELM 527

Query: 346 KNDSKFWMHLSNVYKTIGKEDYSKEAYENAVNLE 379
             D+    HL + Y  +G++  +   +  A+ L+
Sbjct: 528 AGDATINDHLGDAYWRVGRKLEAVFQWNQALELK 561



 Score = 57.8 bits (138), Expect = 8e-13
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 8   KSKDPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQD 67
           K  D     + G  Y     ++K+   F K L   P  P    + G  Y  +  +   +D
Sbjct: 424 KRSDWTVFFQRGIAYERQKLWEKAEPNFRKALELNPDQPQVLNYLG--YSWVDMNINLED 481

Query: 68  SYE---KALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSE---SDDKIIEILGDAY 121
             E   KA+ ++P+D  I+ S       +  F E+V  L+  +E    D  I + LGDAY
Sbjct: 482 GLEMIRKAVELKPDDGYIVDSLGWAYFRMNRFDEAVTELERAAELMAGDATINDHLGDAY 541

Query: 122 LKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDE 163
            + G+  EA+ Q+N  LE KP   EI   K     GL    E
Sbjct: 542 WRVGRKLEAVFQWNQALELKPEEAEIPKIKAKIENGLPPLKE 583



 Score = 54.7 bits (130), Expect = 7e-12
 Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 24  NSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEII 83
           N  K +++IE +     S P    +    G +   +GK   A+   +  + + P ++   
Sbjct: 333 NLKKPEEAIELYKSVPESSPMRRLSELQLGLSLAGIGKVDEAKKHLKGLIDVDPKNIRNY 392

Query: 84  KSYTMLLNSLELFKESVEILKNV--------SESDDKIIEILGDAYLKTGKFNEAILQYN 135
            +Y  +L+  + +KE  E+              SD  +    G AY +   + +A   + 
Sbjct: 393 LAYGSVLSDAKNYKEMGELYDRAVAAIGPVPKRSDWTVFFQRGIAYERQKLWEKAEPNFR 452

Query: 136 NILERKPRYKEILAKKGTALVGLK-KFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKK 194
             LE  P   ++L   G + V +    ++ LE+  K +++ P D  +  ++G A++ + +
Sbjct: 453 KALELNPDQPQVLNYLGYSWVDMNINLEDGLEMIRKAVELKPDDGYIVDSLGWAYFRMNR 512

Query: 195 YEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLE 241
           +++A+   +       GD  +    GDA  ++G+  EA+  + + LE
Sbjct: 513 FDEAVTELERAAELMAGDATINDHLGDAYWRVGRKLEAVFQWNQALE 559



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 19  GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
           G  Y+   ++ +++    +       +       G+AY  +G+   A   + +AL ++P 
Sbjct: 504 GWAYFRMNRFDEAVTELERAAELMAGDATINDHLGDAYWRVGRKLEAVFQWNQALELKPE 563

Query: 79  DLEIIKSYTMLLNSLELFKESVEILKNVSE 108
           + EI K    + N L   KE V    +  E
Sbjct: 564 EAEIPKIKAKIENGLPPLKEPVPAAADAKE 593